Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 6.2e-110 401.0 227 100.0
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 3.0e-48 196.1 161 80.7
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 5.0e-35 152.1 164 67.7
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 8.5e-35 151.4 166 68.1
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.3e-19 100.9 167 56.3
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.3e-19 100.9 167 56.3
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.1e-18 97.8 167 52.7
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 4.3e-18 95.9 161 52.2
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 7.2e-18 95.1 166 52.4
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.6e-17 94.0 152 57.9
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.6e-17 94.0 151 55.6
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.1e-17 93.6 173 49.7
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 2.8e-17 93.2 145 45.5
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 4.7e-17 92.4 116 51.7
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 8.0e-17 91.7 136 59.6
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.4e-16 90.9 152 56.6
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.8e-16 90.5 109 56.0
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 8.9e-16 88.2 111 53.2
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 2.6e-15 86.7 165 53.3
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 3.4e-15 86.3 134 47.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 3.4e-15 86.3 122 45.9
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 5.7e-15 85.5 132 46.2
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 5.7e-15 85.5 134 46.3
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 5.7e-15 85.5 134 46.3
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 5.7e-15 85.5 134 46.3
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.3e-14 84.3 133 42.1
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.3e-14 84.3 121 47.1
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 1.7e-14 84.0 104 47.1
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 2.2e-14 83.6 134 44.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.9e-14 83.2 152 53.3
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 2.9e-14 83.2 87 54.0
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 4.9e-14 82.4 119 49.6
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.9e-14 82.4 152 53.3
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 8.3e-14 81.6 106 60.4
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 8.3e-14 81.6 138 45.7
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.1e-13 81.3 126 44.4
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-13 81.3 83 55.4
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.1e-13 81.3 83 55.4
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.1e-13 81.3 77 55.8
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.4e-13 80.9 126 60.3
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.8e-13 80.5 83 55.4
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.8e-13 80.5 146 53.4
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 1.8e-13 80.5 77 54.5
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 2.4e-13 80.1 115 50.4
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.4e-13 80.1 155 51.0
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 2.4e-13 80.1 161 50.3
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 2.4e-13 80.1 94 47.9
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 2.4e-13 80.1 103 68.0
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 3.2e-13 79.7 83 51.8
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 3.2e-13 79.7 124 61.3
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 3.2e-13 79.7 96 71.9
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 4.1e-13 79.3 122 45.9
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 4.1e-13 79.3 65 63.1
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 4.1e-13 79.3 65 63.1
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 4.1e-13 79.3 65 63.1
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 5.4e-13 79.0 128 45.3
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 5.4e-13 79.0 139 46.0
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 5.4e-13 79.0 139 46.0
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 5.4e-13 79.0 117 47.9
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 5.4e-13 79.0 138 54.3
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 7.0e-13 78.6 112 45.5
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 7.0e-13 78.6 112 45.5
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 7.0e-13 78.6 127 44.1
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 1.2e-12 77.8 133 40.6
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.2e-12 77.8 155 48.4
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.2e-12 77.8 129 54.3
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.6e-12 77.4 121 47.9
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.6e-12 77.4 131 42.7
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 2.0e-12 77.0 185 45.4
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.0e-12 77.0 119 59.7
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 2.7e-12 76.6 128 43.8
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 2.7e-12 76.6 70 57.1
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.5e-12 76.3 131 43.5
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 3.5e-12 76.3 111 45.9
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.5e-12 76.3 152 46.1
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 3.5e-12 76.3 101 65.3
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 5.9e-12 75.5 103 57.3
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 5.9e-12 75.5 102 64.7
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.0e-11 74.7 79 50.6
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.3e-11 74.3 77 53.2
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.3e-11 74.3 130 59.2
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 1.3e-11 74.3 63 61.9
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.7e-11 73.9 68 55.9
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.7e-11 73.9 164 51.8
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 1.7e-11 73.9 115 40.0
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.7e-11 73.9 131 42.7
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 2.3e-11 73.6 135 41.5
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.3e-11 73.6 97 68.0
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 2.3e-11 73.6 165 49.7
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 2.3e-11 73.6 95 66.3
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 3.9e-11 72.8 114 46.5
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 3.9e-11 72.8 72 61.1
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 3.9e-11 72.8 142 42.3
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 5.0e-11 72.4 169 45.0
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 6.6e-11 72.0 56 64.3
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 6.6e-11 72.0 129 45.0
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 6.6e-11 72.0 93 48.4
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 1.5e-10 70.9 63 55.6
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.5e-10 70.1 109 45.0
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.5e-10 70.1 72 62.5
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 2.5e-10 70.1 57 63.2
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 4.3e-10 69.3 207 40.6
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 4.3e-10 69.3 115 40.9
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 5.6e-10 68.9 118 58.5
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 7.3e-10 68.6 155 51.0
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 7.3e-10 68.6 125 40.8
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 9.5e-10 68.2 77 51.9
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.2e-09 67.8 143 39.2
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.6e-09 67.4 112 41.1
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 2.1e-09 67.0 63 54.0
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 3.6e-09 66.2 110 42.7
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 3.6e-09 66.2 105 43.8
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 4.7e-09 65.9 94 56.4
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 4.7e-09 65.9 160 50.0
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 8.0e-09 65.1 52 61.5
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 8.0e-09 65.1 52 61.5
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 8.0e-09 65.1 78 53.8
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 8.0e-09 65.1 62 53.2
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 1.0e-08 64.7 57 59.6
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.4e-08 64.3 115 56.5
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 1.8e-08 63.9 106 60.4
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 3.1e-08 63.2 53 60.4
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 5.2e-08 62.4 52 55.8
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 5.2e-08 62.4 62 51.6
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 8.9e-08 61.6 52 55.8
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.2e-07 61.2 109 39.4
Gorai.004G279900 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.5e-07 60.8 134 37.3
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 3.4e-07 59.7 64 48.4


User provided reference genes

Program Settings