Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 7.2e-240 833.6 437 100.0
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 5.5e-224 780.8 437 93.8
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 4.7e-215 751.1 440 89.3
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 3.7e-180 635.2 441 73.9
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 2.1e-170 602.8 395 78.7
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 6.1e-138 495.0 401 64.8
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.3e-137 493.8 401 64.3
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 4.5e-125 452.2 394 60.4
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 2.1e-122 443.4 400 57.2
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 9.7e-120 434.5 400 56.8
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 6.3e-119 431.8 440 54.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 4.1e-118 429.1 414 54.8
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 7.7e-117 424.9 397 55.7
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 1.3e-116 424.1 402 55.7
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 2.9e-116 422.9 427 54.8
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 3.8e-116 422.5 415 54.0
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 6.5e-116 421.8 401 55.4
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.1e-115 421.0 418 55.5
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 9.4e-115 417.9 399 56.1
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 3.6e-114 416.0 407 54.1
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 2.3e-113 413.3 390 55.9
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 3.9e-113 412.5 445 50.1
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 8.8e-113 411.4 394 55.8
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 1.1e-112 411.0 394 54.3
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.5e-112 410.6 419 52.5
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 2.0e-112 410.2 439 52.8
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 4.4e-112 409.1 434 51.6
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.3e-111 407.5 411 54.0
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-111 407.5 397 55.2
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.3e-111 407.5 400 55.5
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 4.8e-111 405.6 397 54.9
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 8.2e-111 404.8 409 54.5
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.4e-110 404.1 393 54.5
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-110 404.1 397 54.9
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.4e-110 404.1 439 50.6
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.8e-110 403.7 397 54.9
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 2.4e-110 403.3 401 51.6
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 9.1e-110 401.4 396 53.0
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 1.2e-109 401.0 401 53.4
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 4.5e-109 399.1 357 58.5
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.0e-108 397.9 397 54.7
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.7e-108 397.1 392 53.8
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.7e-108 397.1 397 52.6
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 5.0e-108 395.6 411 52.1
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 6.5e-108 395.2 397 52.1
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 8.5e-108 394.8 397 52.6
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.1e-107 394.4 394 52.3
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 5.5e-107 392.1 394 54.3
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 7.2e-107 391.7 398 53.3
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 1.2e-106 391.0 379 55.4
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 1.6e-106 390.6 388 53.6
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 2.7e-106 389.8 397 51.9
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.6e-106 389.4 398 53.3
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-105 387.5 433 50.3
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 3.0e-105 386.3 397 52.1
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 1.2e-104 384.4 392 52.6
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.0e-104 383.6 404 51.0
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.4e-104 382.5 397 52.9
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 7.5e-104 381.7 431 49.0
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.3e-103 380.9 399 49.9
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 2.2e-103 380.2 606 38.4
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 4.8e-103 379.0 405 51.1
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.8e-103 379.0 394 52.3
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 7.0e-102 375.2 394 53.0
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 9.1e-102 374.8 412 49.5
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 1.6e-101 374.0 399 49.9
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 1.6e-101 374.0 399 49.6
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 2.0e-101 373.6 430 47.4
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 4.5e-101 372.5 412 49.5
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 4.5e-101 372.5 412 49.8
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.0e-100 371.3 395 49.1
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 1.0e-100 371.3 396 50.8
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 5.0e-100 369.0 354 55.9
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 2.5e-99 366.7 397 50.1
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.2e-98 364.4 403 50.4
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.6e-98 364.0 393 48.3
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 2.1e-98 363.6 399 47.1
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 3.6e-98 362.8 398 47.7
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 4.7e-98 362.5 398 49.7
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 2.0e-96 357.1 395 48.9
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 5.7e-96 355.5 397 47.6
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 1.3e-95 354.4 399 46.4
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 3.7e-95 352.8 434 43.5
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 8.3e-95 351.7 397 47.4
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 9.1e-94 348.2 392 50.5
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 2.7e-93 346.7 316 56.3
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 2.9e-92 343.2 398 45.2
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 7.2e-91 338.6 471 43.1
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 3.6e-90 336.3 408 47.3
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 3.6e-90 336.3 392 47.4
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 8.0e-90 335.1 397 46.3
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.0e-89 334.7 401 45.9
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 1.4e-89 334.3 397 46.3
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 6.8e-89 332.0 397 45.8
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 6.8e-89 332.0 397 45.8
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 6.8e-89 332.0 397 45.8
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 2.2e-87 327.0 415 44.1
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 2.2e-87 327.0 404 45.5
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 2.2e-87 327.0 404 46.0
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 3.7e-87 326.2 400 45.0
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.3e-84 317.8 401 42.9
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 2.3e-84 317.0 359 51.8
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 9.5e-83 311.6 404 45.0
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.1e-82 310.5 423 43.3
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.4e-81 307.8 394 43.1
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.5e-80 304.3 386 45.9
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 3.4e-80 303.1 394 43.7
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 4.9e-79 299.3 400 42.8
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.9e-76 289.7 425 38.8
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.1e-75 288.1 396 43.4
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 2.5e-75 287.0 403 42.7
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 3.6e-74 283.1 297 53.5
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 1.2e-69 268.1 405 41.7
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 3.9e-68 263.1 395 41.3
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.2e-66 258.1 285 50.9
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.8e-66 256.9 436 38.1
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 1.1e-62 245.0 243 52.7
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 1.7e-60 237.7 217 54.4
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 1.1e-54 218.4 396 37.6
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 4.6e-53 213.0 240 47.5
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 1.7e-52 211.1 370 35.7
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 3.6e-50 203.4 396 37.6
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.7e-47 194.5 308 39.6
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 6.4e-47 192.6 229 45.0
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.4e-47 192.6 378 35.7
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 6.6e-44 182.6 445 31.2
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 1.3e-42 178.3 445 31.2
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 3.1e-41 173.7 234 43.2
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.4e-40 170.2 320 35.6
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 8.4e-39 165.6 287 38.0
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 3.2e-38 163.7 400 34.5
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 5.1e-36 156.4 401 33.7
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-34 151.8 240 39.2
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.8e-34 149.8 397 31.7
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 8.1e-34 149.1 258 36.0
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.4e-33 147.5 138 55.8
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 5.3e-33 146.4 337 34.1
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 1.5e-27 128.3 331 28.7
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 2.5e-27 127.5 110 56.4
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.7e-23 114.8 153 43.1
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 7.2e-22 109.4 157 42.7
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.6e-21 106.7 173 37.0
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 3.0e-20 104.0 108 50.0
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 5.1e-20 103.2 92 56.5
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 6.7e-20 102.8 179 36.3
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.9e-19 101.3 157 36.9
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 2.2e-18 97.8 452 24.6
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 3.2e-14 84.0 166 33.7
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.1e-12 76.6 135 35.6
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 6.7e-12 76.3 115 39.1
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 6.7e-12 76.3 115 39.1
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 1.7e-10 71.6 135 38.5
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.8e-10 70.1 112 33.9
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 6.3e-10 69.7 103 40.8
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 3.4e-08 63.9 138 32.6
Ca_02098_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.9e-07 60.8 128 33.6


User provided reference genes

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