Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 0.0e+00 1669.1 915 100.0
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 0.0e+00 1355.9 895 83.6
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 0.0e+00 1188.3 879 76.0
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 3.3e-287 991.9 883 64.6
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 7.9e-148 528.9 885 41.7
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 1.1e-138 498.4 872 40.6
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 2.0e-130 471.1 890 40.2
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 1.1e-125 455.3 874 39.5
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 1.2e-124 451.8 876 38.6
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 6.1e-124 449.5 873 39.2
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.5e-122 444.9 893 38.7
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 1.7e-121 441.4 893 39.0
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.7e-118 431.4 893 38.6
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 3.8e-118 430.3 886 38.1
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.6e-116 423.7 889 38.7
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 4.7e-116 423.3 904 38.1
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 4.4e-114 416.8 910 36.9
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.7e-113 413.7 916 37.4
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 3.8e-110 403.7 907 37.0
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 6.8e-107 392.9 820 37.9
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 4.4e-106 390.2 886 35.2
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 9.8e-106 389.0 868 36.3
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 1.3e-105 388.7 873 37.3
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 4.1e-104 383.6 894 35.1
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 7.8e-103 379.4 843 38.2
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 1.7e-102 378.3 857 37.8
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 6.6e-102 376.3 849 37.9
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 1.9e-101 374.8 888 35.8
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 3.4e-98 364.0 865 33.9
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 1.3e-97 362.1 955 33.1
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 3.5e-95 354.0 901 34.2
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 1.3e-94 352.1 622 40.0
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 8.9e-91 339.3 882 33.9
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 5.8e-90 336.7 871 33.2
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 9.8e-90 335.9 482 44.6
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 1.3e-89 335.5 915 33.4
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 2.9e-89 334.3 509 44.0
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 3.7e-89 334.0 931 32.8
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 8.3e-89 332.8 838 35.1
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 1.1e-88 332.4 601 39.8
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 1.9e-88 331.6 637 37.7
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 1.2e-87 328.9 803 34.4
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 1.3e-86 325.5 839 33.7
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 3.9e-86 323.9 917 33.3
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 5.6e-85 320.1 908 31.8
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 2.8e-84 317.8 491 43.8
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 3.6e-84 317.4 894 32.9
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 8.1e-84 316.2 932 32.9
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 1.4e-83 315.5 928 31.5
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 8.9e-83 312.8 893 32.0
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 3.4e-82 310.8 669 36.3
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 5.8e-82 310.1 851 32.5
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 4.9e-81 307.0 497 40.0
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 4.6e-79 300.4 910 30.8
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 3.0e-78 297.7 824 33.3
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 1.1e-77 295.8 872 32.3
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 7.3e-77 293.1 875 33.1
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 9.5e-77 292.7 492 39.6
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 9.5e-77 292.7 880 30.7
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 4.0e-75 287.3 903 30.7
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 5.2e-75 287.0 910 30.5
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 2.6e-74 284.6 849 31.4
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 3.4e-74 284.3 613 38.7
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 3.4e-74 284.3 684 35.2
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 6.0e-71 273.5 497 39.6
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 3.0e-70 271.2 873 30.6
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 3.9e-70 270.8 825 30.3
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 1.5e-69 268.9 454 40.1
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 2.5e-69 268.1 471 39.1
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 4.8e-68 263.8 263 54.8
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 4.8e-68 263.8 458 39.3
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 6.9e-67 260.0 879 29.6
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 3.4e-66 257.7 897 28.9
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 5.8e-66 256.9 501 35.5
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 1.3e-65 255.8 923 29.8
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 2.2e-65 255.0 523 36.9
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 3.8e-65 254.2 981 28.6
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 2.1e-63 248.4 434 41.0
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 3.5e-63 247.7 913 28.3
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 6.0e-63 246.9 872 29.0
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 8.7e-62 243.0 796 29.5
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 4.0e-59 234.2 863 29.3
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 6.9e-59 233.4 857 30.3
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 1.5e-58 232.3 879 28.4
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 2.0e-58 231.9 861 30.7
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 2.0e-58 231.9 861 30.7
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 2.6e-58 231.5 424 38.7
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 3.4e-58 231.1 875 28.7
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 6.4e-57 226.9 864 28.4
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 1.1e-56 226.1 877 28.8
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 5.4e-56 223.8 682 34.2
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 4.6e-55 220.7 853 29.3
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 6.0e-55 220.3 399 37.8
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 1.0e-54 219.5 853 29.3
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 2.5e-53 214.9 832 28.8
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 1.2e-47 196.1 476 34.5
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 7.9e-47 193.4 511 29.9
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 2.4e-43 181.8 524 30.7
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 4.0e-43 181.0 485 32.2
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 2.6e-42 178.3 546 30.0
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 2.6e-42 178.3 529 29.5
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.4e-42 177.9 169 54.4
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 5.8e-42 177.2 467 31.9
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 1.0e-41 176.4 525 29.5
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 6.3e-36 157.1 707 28.1
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 4.1e-35 154.5 307 38.4
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 2.0e-34 152.1 653 28.9
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 3.1e-19 101.7 134 46.3
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 5.2e-14 84.3 408 24.8
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 5.0e-09 67.8 375 23.2
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 5.0e-09 67.8 375 23.2
FvH4_5g06191 Fragaria vesca HOM05D001393 ORTHO05D007477 2.1e-07 62.4 72 47.2
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 1.0e-06 60.1 152 33.6
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 3.0e-06 58.5 60 53.3


User provided reference genes

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