Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022506.2 Cucumis melo HOM05D000135 ORTHO05D034966 5.5e-50 200.7 102 100.0
CsaV3_6G006120 Cucumis sativus L. HOM05D000135 ORTHO05D034966 2.6e-47 191.8 101 95.0
Sed0011935 Sechium edule HOM05D000135 ORTHO05D034966 6.5e-27 124.0 97 64.9
Potri.014G070700 Populus trichocarpa HOM05D000135 ORTHO05D000203 3.5e-12 75.1 62 56.5
CANSAT56G3781 Cannabis sativa HOM05D000135 ORTHO05D000203 2.3e-11 72.4 76 47.4
Prupe.2G146900 Prunus persica HOM05D000135 ORTHO05D000203 3.0e-11 72.0 62 56.5
MD07G1123300 Malus domestica HOM05D000135 ORTHO05D000203 6.6e-11 70.9 62 54.8
Cc02_g36580 Coffea canephora HOM05D000135 ORTHO05D000203 8.6e-11 70.5 62 54.8
Lj7P527T50 Lonicera japonica HOM05D000135 ORTHO05D000203 8.6e-11 70.5 63 55.6
Glyma.03G022800 Glycine max HOM05D000135 ORTHO05D000203 1.5e-10 69.7 60 53.3
Gorai.004G160800 Gossypium raimondii HOM05D000135 ORTHO05D000203 1.5e-10 69.7 70 50.0
Atru.chr5.322 Acer truncatum HOM05D000135 ORTHO05D000203 1.9e-10 69.3 81 45.7
VMungo0331G0947 Vigna mungo HOM05D000135 ORTHO05D000203 1.9e-10 69.3 83 44.6
Psat3g115400 Pisum sativum HOM05D000135 ORTHO05D000203 2.5e-10 68.9 62 51.6
QL08p052108 Quercus lobata HOM05D000135 ORTHO05D000203 2.5e-10 68.9 68 50.0
RcHm_v2.0_Chr1g0350741 Rosa chinensis HOM05D000135 ORTHO05D000203 2.5e-10 68.9 97 43.3
Cfa001707 Carpinus fangiana HOM05D000135 ORTHO05D000203 3.3e-10 68.6 68 50.0
COL.COLO4_12560 Corchorus olitorius HOM05D000135 ORTHO05D000203 4.3e-10 68.2 62 53.2
Duzib133G1170 Durio zibethinus HOM05D000135 ORTHO05D000203 4.3e-10 68.2 60 51.7
FvH4_7g12030 Fragaria vesca HOM05D000135 ORTHO05D000203 4.3e-10 68.2 63 55.6
FAN03G2295 Fragaria x ananassa HOM05D000528 ORTHO05D000999 4.3e-10 68.2 63 55.6
FAN06G3409 Fragaria x ananassa HOM05D000528 ORTHO05D000999 4.3e-10 68.2 63 55.6
FAN06G3597 Fragaria x ananassa HOM05D000528 ORTHO05D000999 4.3e-10 68.2 63 55.6
FAN10G0017 Fragaria x ananassa HOM05D000528 ORTHO05D000999 4.3e-10 68.2 63 55.6
FAN10G3426 Fragaria x ananassa HOM05D000528 ORTHO05D000999 4.3e-10 68.2 63 55.6
Nitab4.5_0000457g0360 Nicotiana tabacum HOM05D000135 ORTHO05D000203 4.3e-10 68.2 64 51.6
Phvul.010G085100 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 4.3e-10 68.2 73 47.9
TPR.G26934 Trifolium pratense HOM05D000135 ORTHO05D000203 5.6e-10 67.8 101 40.6
Ciclev10022392m.g Citrus clementina HOM05D000135 ORTHO05D000203 7.3e-10 67.4 63 49.2
Gohir.A08G133500 Gossypium hirsutum HOM05D000135 ORTHO05D000203 7.3e-10 67.4 70 48.6
Gohir.D08G154700 Gossypium hirsutum HOM05D000135 ORTHO05D000203 9.5e-10 67.0 70 48.6
Medtr7g075040 Medicago truncatula HOM05D000135 ORTHO05D000203 9.5e-10 67.0 75 46.7
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 1.6e-09 66.2 63 50.8
Medtr8g036075 Medicago truncatula HOM05D000135 ORTHO05D000203 2.8e-09 65.5 60 48.3
SGA_v2.0_scaffold95G28897 Striga asiatica HOM05D000135 ORTHO05D000203 2.8e-09 65.5 106 36.8
ATR0810G171 Amborella trichopoda HOM05D000135 ORTHO05D000203 3.6e-09 65.1 70 44.3
Nitab4.5_0002993g0050 Nicotiana tabacum HOM05D000135 ORTHO05D000203 3.6e-09 65.1 63 50.8
PSO782G1943 Papaver somniferum HOM05D000135 ORTHO05D000203 3.6e-09 65.1 62 48.4
Sopen01g037210 Solanum pennellii HOM05D000135 ORTHO05D000203 3.6e-09 65.1 64 53.1
TAR629G0786 Trochodendron aralioides HOM05D000135 ORTHO05D000203 4.7e-09 64.7 63 47.6
Glyma.18G221300 Glycine max HOM05D000135 ORTHO05D000203 6.2e-09 64.3 60 50.0
Peaxi162Scf00021g00151 Petunia axillaris HOM05D000135 ORTHO05D000203 6.2e-09 64.3 64 54.7
vmacro21001 Vaccinium macrocarpon HOM05D000135 ORTHO05D000203 6.2e-09 64.3 63 47.6
Cpa.g.sc18.122 Carica papaya HOM05D000135 ORTHO05D000203 8.0e-09 63.9 70 45.7
Rhsim01G0162600 Rhododendron simsii HOM05D000135 ORTHO05D000203 8.0e-09 63.9 101 38.6
TPR.G21728 Trifolium pratense HOM05D000135 ORTHO05D000203 8.0e-09 63.9 60 46.7
CSS0011314 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.1e-08 63.5 62 50.0
CSS0038900 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.1e-08 63.5 62 50.0
Duzib068G0067 Durio zibethinus HOM05D000135 ORTHO05D000203 1.1e-08 63.5 74 39.2
Duzib138G1079 Durio zibethinus HOM05D000135 ORTHO05D000203 1.4e-08 63.2 60 48.3
Lj3g0027917 Lotus japonicus HOM05D000135 ORTHO05D000203 1.4e-08 63.2 63 50.8
PGSC0003DMG400012770 Solanum tuberosum HOM05D000135 ORTHO05D000203 1.8e-08 62.8 64 51.6
Thecc.01G374900 Theobroma cacao HOM05D000135 ORTHO05D000203 1.8e-08 62.8 60 48.3
Aqoxy7G00595 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 2.3e-08 62.4 63 47.6
COL.COLO4_23844 Corchorus olitorius HOM05D000135 ORTHO05D000203 3.1e-08 62.0 70 42.9
Glyma.01G144300 Glycine max HOM05D000135 ORTHO05D000203 3.1e-08 62.0 60 48.3
Actinidia12266 Actinidia chinensis HOM05D000135 ORTHO05D000203 4.0e-08 61.6 63 46.0
Actinidia31417 Actinidia chinensis HOM05D000135 ORTHO05D000203 4.0e-08 61.6 63 46.0
Lalb_Chr07g0189701 Lupinus albus HOM05D000135 ORTHO05D000203 4.0e-08 61.6 95 37.9
Psat4g195360 Pisum sativum HOM05D000135 ORTHO05D000203 4.0e-08 61.6 99 38.4
CDE04G3406 Ceratophyllum demersum HOM05D000135 ORTHO05D000203 5.2e-08 61.2 60 51.7
MSTRG.17201 Avicennia marina HOM05D000135 ORTHO05D000203 8.9e-08 60.5 93 37.6
HanXRQChr17g0562461 Helianthus annuus HOM05D000135 ORTHO05D000203 8.9e-08 60.5 62 46.8
MD02G1202000 Malus domestica HOM05D000135 ORTHO05D000203 8.9e-08 60.5 62 50.0
HanXRQChr16g0521621 Helianthus annuus HOM05D000135 ORTHO05D000203 1.5e-07 59.7 101 37.6
Lsat_1_v5_gn_4_38941 Lactuca sativa HOM05D000135 ORTHO05D000203 1.5e-07 59.7 62 46.8
SalBow5G4919 Salvia bowleyana HOM05D000135 ORTHO05D000203 1.5e-07 59.7 91 35.2
CAN.G388.1 Capsicum annuum HOM05D000135 ORTHO05D000203 2.0e-07 59.3 65 49.2
unitig_749.g14368 Utricularia gibba HOM05D000135 ORTHO05D000203 2.0e-07 59.3 57 45.6
unitig_76.g29095 Utricularia gibba HOM05D000135 ORTHO05D000203 2.0e-07 59.3 57 45.6
Duzib084G0754 Durio zibethinus HOM05D000135 ORTHO05D000203 2.6e-07 58.9 74 36.5
Hma1.2p1_0719F.1_g208500 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 2.6e-07 58.9 63 44.4
PSO210G5281 Papaver somniferum HOM05D000135 ORTHO05D003168 2.6e-07 58.9 61 54.1
PSO832G3512 Papaver somniferum HOM05D000135 ORTHO05D003168 2.6e-07 58.9 61 54.1
EL10Ac1g00907 Beta vulgaris HOM05D000135 ORTHO05D000203 3.4e-07 58.5 87 34.5
PSO173G0179 Papaver somniferum HOM05D000135 ORTHO05D000203 4.4e-07 58.2 61 50.8
MELO3C005272.2 Cucumis melo HOM05D000135 ORTHO05D000203 5.8e-07 57.8 96 36.5
ECA234G0564 Erigeron canadensis HOM05D000135 ORTHO05D000203 9.8e-07 57.0 57 47.4
CSS0029226 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 3.7e-06 55.1 58 48.3
Aqoxy3G04020 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 4.9e-06 54.7 58 48.3
CDE08G1447 Ceratophyllum demersum HOM05D000469 ORTHO05D000323 6.4e-06 54.3 93 41.9
CDE11G0709 Ceratophyllum demersum HOM05D000135 ORTHO05D000203 6.4e-06 54.3 79 38.0
CsaV3_5G028160 Cucumis sativus L. HOM05D000135 ORTHO05D000203 6.4e-06 54.3 96 35.4
Hma1.2p1_0015F.1_g010650 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 6.4e-06 54.3 58 48.3


User provided reference genes

Program Settings