Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 7.5e-65 250.4 126 100.0
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 5.6e-44 181.0 110 83.6
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 2.2e-40 169.1 123 69.1
CsaV3_5G039910 Cucumis sativus L. HOM05D007718 ORTHO05D009752 3.9e-37 158.3 89 91.0
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 2.1e-30 136.0 114 58.8
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 1.0e-29 133.7 111 60.4
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 2.5e-28 129.0 102 59.8
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 5.6e-28 127.9 111 55.0
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 5.6e-28 127.9 125 54.4
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 5.6e-28 127.9 110 58.2
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 5.6e-28 127.9 87 70.1
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 7.3e-28 127.5 118 55.1
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 1.2e-27 126.7 125 52.8
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 6.2e-27 124.4 93 62.4
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 8.1e-27 124.0 86 66.3
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 1.8e-26 122.9 119 50.4
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 4.0e-26 121.7 88 63.6
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 4.0e-26 121.7 93 63.4
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 5.2e-26 121.3 86 65.1
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 1.5e-25 119.8 93 59.1
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 2.0e-25 119.4 87 64.4
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 2.0e-25 119.4 86 68.6
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 2.6e-25 119.0 107 55.1
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 3.4e-25 118.6 89 61.8
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 3.4e-25 118.6 111 54.1
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 4.4e-25 118.2 84 66.7
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 4.4e-25 118.2 84 66.7
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 5.8e-25 117.9 93 60.2
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 5.8e-25 117.9 88 62.5
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 7.6e-25 117.5 113 53.1
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 1.3e-24 116.7 111 53.2
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 2.2e-24 115.9 87 62.1
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 2.2e-24 115.9 87 62.1
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 2.9e-24 115.5 87 60.9
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 4.9e-24 114.8 92 58.7
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 6.4e-24 114.4 87 59.8
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 1.4e-23 113.2 91 56.0
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 1.4e-23 113.2 113 51.3
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 1.9e-23 112.8 87 59.8
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 2.4e-23 112.5 114 50.9
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 2.4e-23 112.5 92 57.6
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 7.1e-23 110.9 87 62.1
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 1.2e-22 110.2 88 53.4
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 1.6e-22 109.8 93 54.8
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 1.6e-22 109.8 82 62.2
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 1.6e-22 109.8 89 52.8
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 1.0e-21 107.1 93 55.9
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 3.0e-21 105.5 102 51.0
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 5.1e-21 104.8 68 70.6
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 1.5e-20 103.2 87 52.9
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 1.9e-20 102.8 85 52.9
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 5.6e-20 101.3 86 54.7
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 1.6e-19 99.8 79 60.8
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 1.4e-18 96.7 72 58.3
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 1.4e-18 96.7 111 45.0
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 1.5e-17 93.2 93 45.2
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 2.6e-17 92.4 63 65.1
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 2.6e-17 92.4 63 65.1
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 2.6e-17 92.4 57 73.7
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 4.4e-17 91.7 52 75.0
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 1.3e-16 90.1 50 76.0
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 2.2e-16 89.4 50 74.0
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 2.9e-16 89.0 52 75.0
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 6.4e-16 87.8 52 71.2
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 6.4e-16 87.8 90 51.1
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 8.4e-16 87.4 51 74.5
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 1.4e-15 86.7 52 69.2
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 1.4e-15 86.7 74 54.1
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 1.9e-15 86.3 50 72.0
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 3.2e-15 85.5 49 73.5
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 3.2e-15 85.5 47 78.7
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 4.2e-15 85.1 93 50.5
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 9.3e-15 84.0 114 41.2
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 1.6e-14 83.2 84 52.4
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 4.6e-14 81.6 67 53.7
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 1.3e-13 80.1 51 70.6
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 2.3e-13 79.3 87 44.8
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 3.9e-13 78.6 74 51.4
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 2.5e-12 75.9 65 47.7
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 4.3e-12 75.1 79 40.5
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 4.3e-12 75.1 76 50.0
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 2.1e-11 72.8 177 31.1
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 2.8e-11 72.4 94 42.6
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 4.0e-10 68.6 47 63.8
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.7e-08 63.2 39 69.2
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.7e-08 63.2 39 69.2
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 3.2e-07 58.9 36 69.4


User provided reference genes

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