Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 1.6e-256 889.0 490 100.0
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 1.6e-235 819.3 478 94.8
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 1.9e-225 785.8 480 91.5
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 1.4e-207 726.5 481 84.8
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 1.9e-204 716.1 486 84.0
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.3e-168 597.0 486 71.2
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 6.3e-168 594.7 489 71.4
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 1.7e-165 586.6 486 71.2
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 2.9e-165 585.9 490 69.6
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 6.5e-165 584.7 495 67.9
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.5e-164 583.6 490 69.6
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 6.1e-163 578.2 485 68.7
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 1.8e-162 576.6 491 70.1
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 3.3e-161 572.4 484 69.0
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 7.4e-161 571.2 488 68.9
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 5.3e-159 565.1 506 66.2
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 5.9e-158 561.6 487 68.2
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 7.7e-158 561.2 493 67.7
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 1.6e-155 553.5 563 57.2
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 1.8e-154 550.1 484 66.9
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 5.2e-154 548.5 484 64.5
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 2.0e-153 546.6 485 67.0
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 2.6e-153 546.2 485 67.2
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 7.5e-153 544.7 482 67.2
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 2.8e-152 542.7 487 63.9
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 1.6e-150 537.0 434 69.8
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 2.0e-150 536.6 491 66.4
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 6.5e-149 531.6 490 66.7
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.1e-148 530.8 479 66.4
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.7e-147 526.2 480 65.8
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 6.1e-147 525.0 447 66.7
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 8.8e-146 521.2 485 66.4
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 7.5e-145 518.1 488 63.1
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 7.5e-145 518.1 490 62.7
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 1.7e-144 516.9 474 64.8
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 6.3e-144 515.0 488 64.3
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 8.3e-144 514.6 490 62.2
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 1.4e-143 513.8 481 63.8
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 1.8e-143 513.5 484 64.0
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 7.0e-143 511.5 493 58.4
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 1.2e-142 510.8 476 64.5
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 5.9e-142 508.4 487 64.3
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 5.9e-142 508.4 390 74.4
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.0e-141 507.7 501 63.1
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 1.7e-141 506.9 495 63.8
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 2.3e-141 506.5 475 64.0
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.9e-140 503.4 493 61.5
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 2.5e-140 503.1 502 61.4
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 7.2e-140 501.5 418 68.9
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 1.2e-139 500.7 490 63.5
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 2.1e-139 500.0 420 68.8
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 2.8e-139 499.6 377 73.2
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 3.6e-139 499.2 420 66.4
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 4.7e-139 498.8 479 62.0
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 3.0e-138 496.1 409 69.4
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 5.2e-138 495.4 409 69.4
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 6.8e-138 495.0 494 61.1
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 2.6e-137 493.0 491 60.5
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 3.4e-137 492.7 421 66.0
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.4e-137 492.3 489 58.1
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 5.7e-137 491.9 480 62.3
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 9.8e-137 491.1 490 61.2
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.7e-136 490.3 489 60.9
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 4.9e-136 488.8 377 72.9
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 5.4e-135 485.3 487 61.6
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 7.0e-135 485.0 430 66.7
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 9.2e-135 484.6 490 60.0
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 1.2e-134 484.2 370 72.7
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 1.0e-133 481.1 490 59.8
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 1.0e-133 481.1 491 60.3
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.3e-133 480.7 455 63.5
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 1.3e-133 480.7 491 60.1
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 2.9e-133 479.6 469 62.0
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 5.6e-132 475.3 457 61.9
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 1.6e-131 473.8 493 59.4
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 4.0e-130 469.2 491 55.8
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 5.8e-129 465.3 497 58.4
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 7.5e-129 464.9 487 59.5
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 7.5e-129 464.9 487 59.3
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 2.4e-127 459.9 493 58.2
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 9.2e-127 458.0 496 58.5
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.1e-124 451.1 412 64.1
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 4.3e-124 449.1 483 53.0
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 3.6e-123 446.0 484 57.4
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 4.7e-123 445.7 514 51.8
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 6.2e-123 445.3 501 57.7
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 4.0e-122 442.6 494 55.1
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 6.8e-122 441.8 493 56.4
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 1.5e-121 440.7 488 59.0
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 9.8e-121 438.0 384 63.0
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 6.4e-120 435.3 453 56.7
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 2.1e-118 430.3 487 55.2
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 2.7e-118 429.9 484 55.0
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 4.6e-118 429.1 484 54.8
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 8.6e-117 424.9 455 52.5
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 7.3e-116 421.8 473 51.6
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 7.3e-116 421.8 484 55.4
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 9.5e-116 421.4 453 55.8
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 2.1e-115 420.2 485 54.8
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 4.7e-115 419.1 472 51.7
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 2.3e-114 416.8 461 58.1
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 3.1e-114 416.4 483 54.7
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 5.2e-114 415.6 453 57.2
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 2.9e-112 409.8 489 53.6
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 1.1e-111 407.9 363 62.3
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 5.4e-111 405.6 483 54.2
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 1.2e-110 404.4 481 53.0
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 3.5e-110 402.9 483 53.4
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.6e-107 394.0 492 50.6
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 6.2e-107 392.1 421 58.0
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 2.4e-106 390.2 371 61.7
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 1.0e-101 374.8 464 52.2
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 7.3e-100 368.6 435 54.3
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 2.9e-96 356.7 436 53.4
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 4.2e-95 352.8 352 62.5
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 3.0e-93 346.7 441 51.9
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 7.9e-86 322.0 436 49.5
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 7.6e-81 305.4 242 62.4
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.1e-74 285.0 285 59.3
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 4.5e-73 279.6 499 42.3
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 4.8e-59 233.0 447 34.9
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 2.0e-52 211.1 278 44.2
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 4.1e-50 203.4 456 38.2
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.6e-49 201.4 163 63.8
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 1.6e-49 201.4 226 48.2
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 5.2e-45 186.4 254 44.1
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 1.4e-37 161.8 480 31.7
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 3.5e-25 120.6 130 50.8
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.1e-23 115.5 525 25.7
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 5.2e-21 106.7 85 63.5
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 7.5e-20 102.8 81 63.0
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 4.9e-19 100.1 128 47.7
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 2.5e-15 87.8 168 38.7
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 3.3e-15 87.4 167 35.9
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 1.2e-12 79.0 130 37.7
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 8.6e-08 62.8 244 32.8
Duzib235G0476 Durio zibethinus HOM05D005639 ORTHO05D007234 1.5e-07 62.0 107 44.9
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 4.3e-07 60.5 118 34.7
BcaB06g25383 Brassica carinata HOM05D005639 ORTHO05D093847 1.6e-06 58.5 86 41.9
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.6e-06 58.5 259 22.8
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.6e-06 58.5 259 22.8
Rhsim12G0161600 Rhododendron simsii HOM05D000453 ORTHO05D000387 4.7e-06 57.0 117 35.9
vmacro16690 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 6.2e-06 56.6 238 31.5
Lj1g0006305 Lotus japonicus HOM05D000464 ORTHO05D006292 8.1e-06 56.2 259 28.2


User provided reference genes

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