Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 5.5e-142 507.7 265 100.0
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 4.1e-105 385.2 206 98.5
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 4.7e-85 318.5 206 84.0
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 5.8e-75 285.0 199 75.9
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 1.0e-71 274.2 197 72.1
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 1.3e-71 273.9 206 70.4
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 1.7e-71 273.5 204 70.1
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 5.1e-71 271.9 200 72.5
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 1.1e-70 270.8 199 73.9
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 8.1e-69 264.6 198 70.7
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 1.8e-68 263.5 197 71.6
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 3.1e-68 262.7 206 68.0
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 3.1e-68 262.7 201 67.2
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 8.9e-68 261.2 199 69.3
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 8.9e-68 261.2 196 69.9
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 8.9e-68 261.2 200 70.0
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 1.5e-67 260.4 199 69.8
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 1.5e-67 260.4 197 71.1
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 2.0e-67 260.0 205 67.8
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 2.0e-67 260.0 198 69.2
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 9.9e-67 257.7 204 69.6
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 9.9e-67 257.7 201 68.2
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 2.9e-66 256.1 193 70.5
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 2.9e-66 256.1 193 70.5
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.9e-66 256.1 198 68.7
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 2.9e-66 256.1 192 70.8
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 2.9e-66 256.1 207 67.1
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 3.7e-66 255.8 190 72.1
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 4.9e-66 255.4 219 62.6
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 4.9e-66 255.4 198 68.7
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 6.4e-66 255.0 198 68.2
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 6.4e-66 255.0 204 65.2
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 8.3e-66 254.6 199 65.8
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 1.1e-65 254.2 192 69.8
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.1e-65 254.2 206 66.5
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.4e-65 253.8 198 67.7
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.4e-65 253.8 198 67.7
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 1.4e-65 253.8 201 64.7
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.9e-65 253.4 190 70.0
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 1.9e-65 253.4 204 65.7
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 2.4e-65 253.1 197 68.5
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 2.4e-65 253.1 204 65.2
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 3.2e-65 252.7 202 68.3
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 3.2e-65 252.7 202 68.8
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 3.2e-65 252.7 202 68.8
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 3.2e-65 252.7 190 70.5
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 3.2e-65 252.7 194 66.5
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 4.1e-65 252.3 193 69.9
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 7.1e-65 251.5 206 65.0
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 7.1e-65 251.5 206 65.0
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 9.2e-65 251.1 205 66.3
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 9.2e-65 251.1 205 66.3
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 9.2e-65 251.1 198 66.7
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 1.6e-64 250.4 202 67.8
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 1.6e-64 250.4 199 68.3
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 2.1e-64 250.0 206 67.5
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 2.1e-64 250.0 204 67.2
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 2.7e-64 249.6 198 67.7
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 2.7e-64 249.6 203 64.5
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 3.5e-64 249.2 206 66.0
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 3.5e-64 249.2 206 63.6
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 3.5e-64 249.2 197 68.0
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 3.5e-64 249.2 202 66.3
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 4.6e-64 248.8 205 65.9
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 4.6e-64 248.8 197 66.0
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 7.8e-64 248.1 194 65.5
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 7.8e-64 248.1 206 64.6
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 7.8e-64 248.1 206 63.6
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 1.7e-63 246.9 191 68.1
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 1.7e-63 246.9 197 66.0
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 6.6e-63 245.0 190 68.9
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 6.6e-63 245.0 202 67.8
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 8.6e-63 244.6 187 69.0
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 8.6e-63 244.6 197 65.0
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 1.9e-62 243.4 197 66.0
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 2.5e-62 243.0 197 65.5
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 3.3e-62 242.7 199 65.8
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 3.3e-62 242.7 199 62.8
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 4.3e-62 242.3 200 66.5
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 4.3e-62 242.3 196 66.3
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 7.3e-62 241.5 201 63.2
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 2.8e-61 239.6 202 63.4
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 3.6e-61 239.2 235 57.9
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 1.4e-60 237.3 197 64.5
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 1.4e-60 237.3 202 64.4
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 2.4e-60 236.5 197 65.0
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 4.0e-60 235.7 206 65.5
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 8.9e-60 234.6 195 64.1
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 2.0e-59 233.4 205 62.4
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 3.4e-59 232.6 195 64.6
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 3.4e-59 232.6 207 59.9
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 2.2e-58 229.9 198 60.1
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 3.8e-58 229.2 204 60.3
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 2.1e-56 223.4 197 61.9
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 3.5e-56 222.6 201 58.7
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 1.0e-55 221.1 197 61.4
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.7e-55 220.3 201 61.7
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 1.9e-54 216.9 168 64.9
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 9.6e-54 214.5 155 69.0
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 9.6e-54 214.5 155 69.0
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 2.1e-53 213.4 160 68.1
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 5.3e-52 208.8 187 60.4
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 8.4e-50 201.4 158 66.5
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 1.3e-47 194.1 360 37.5
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 3.9e-47 192.6 157 60.5
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 1.1e-46 191.0 140 72.1
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 6.2e-45 185.3 112 89.3
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 3.8e-42 176.0 157 58.6
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 1.1e-41 174.5 182 53.8
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.9e-41 173.7 131 64.9
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 1.0e-39 167.9 131 61.8
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 5.1e-39 165.6 207 44.0
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 3.3e-38 162.9 122 73.0
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 1.3e-37 161.0 116 74.1
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 9.0e-36 154.8 196 44.9
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 3.8e-34 149.4 114 70.2
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 1.4e-33 147.5 156 55.1
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 7.4e-30 135.2 127 58.3
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 4.8e-29 132.5 199 43.2
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 1.7e-26 124.0 192 37.5
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.3e-23 114.4 129 53.5
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 6.7e-23 112.1 134 47.8
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 4.8e-21 105.9 68 75.0
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 6.3e-21 105.5 80 67.5
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 9.0e-20 101.7 73 72.6
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 9.4e-17 91.7 74 67.6
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.4e-15 87.8 72 63.9
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 5.7e-14 82.4 60 66.7
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 4.8e-13 79.3 187 31.6
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 2.0e-11 73.9 48 72.9
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.3e-10 71.2 47 76.6


User provided reference genes

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