Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 0.0e+00 1512.7 816 100.0
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 0.0e+00 1476.8 816 97.3
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 0.0e+00 1434.5 816 93.1
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 0.0e+00 1347.0 812 89.4
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1111.7 820 71.6
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1109.7 818 70.5
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1094.7 854 68.3
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1093.2 814 70.0
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1091.3 814 70.0
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1089.7 814 70.0
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1088.6 814 70.1
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1085.1 816 69.5
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1084.3 818 69.2
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1078.9 816 69.9
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1078.9 815 69.9
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1077.0 814 69.7
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1075.5 821 69.1
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 1.1e-311 1072.8 818 69.2
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 2.8e-311 1071.6 818 69.3
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 8.4e-311 1070.1 818 69.1
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 1.6e-309 1065.8 818 68.6
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 4.0e-308 1061.2 815 68.8
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 6.7e-308 1060.4 818 68.1
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 3.3e-307 1058.1 818 69.3
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 5.7e-307 1057.4 818 68.1
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.8e-306 1055.0 817 67.9
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 8.2e-306 1053.5 816 67.6
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 1.0e-303 1046.6 786 70.6
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 6.5e-303 1043.9 817 66.8
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 4.7e-301 1037.7 818 67.7
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 1.0e-300 1036.6 818 67.0
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 1.4e-300 1036.2 822 66.9
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 1.2e-299 1033.1 816 67.3
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 2.8e-298 1028.5 816 66.1
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 7.0e-297 1023.8 814 66.3
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.6e-296 1022.7 818 66.5
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 2.7e-296 1021.9 820 66.3
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 4.5e-296 1021.1 817 65.6
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 4.5e-296 1021.1 816 65.6
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 4.5e-296 1021.1 815 66.0
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 2.2e-295 1018.8 814 66.3
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 1.1e-294 1016.5 786 69.0
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 7.5e-291 1003.8 841 64.6
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.8e-290 1001.9 817 64.7
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 1.4e-289 999.6 821 64.9
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 2.4e-289 998.8 816 64.7
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 2.4e-289 998.8 816 64.7
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 4.5e-288 994.6 818 65.4
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 7.7e-288 993.8 817 65.2
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 4.3e-286 988.0 817 64.3
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 2.1e-285 985.7 821 64.6
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 1.0e-284 983.4 818 64.4
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 4.0e-284 981.5 825 64.8
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 6.8e-284 980.7 821 63.5
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 7.5e-283 977.2 827 62.2
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 9.8e-283 976.9 815 62.8
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 1.7e-282 976.1 838 63.4
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 2.2e-282 975.7 820 64.3
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 6.4e-282 974.2 822 63.5
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 1.4e-281 973.0 813 62.6
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.4e-281 973.0 814 62.5
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.4e-281 973.0 887 59.9
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.2e-280 969.9 814 63.0
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.6e-280 969.5 813 62.7
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 1.6e-280 969.5 855 62.1
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 2.7e-280 968.8 825 62.8
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 1.7e-279 966.1 757 67.4
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 3.0e-279 965.3 813 62.2
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 3.3e-278 961.8 814 62.3
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 9.5e-278 960.3 819 63.2
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 2.1e-277 959.1 814 62.8
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 3.6e-277 958.4 813 61.5
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 8.0e-277 957.2 813 61.6
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 1.4e-276 956.4 818 63.7
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 2.3e-276 955.7 814 64.9
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 3.1e-276 955.3 815 64.9
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 5.2e-276 954.5 842 61.5
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 2.2e-274 949.1 751 66.0
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 4.6e-272 941.4 752 65.6
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 5.0e-271 937.9 829 60.1
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 5.0e-271 937.9 812 61.5
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 9.5e-270 933.7 812 61.6
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 2.1e-269 932.6 815 62.9
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.2e-267 926.8 856 58.5
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 4.9e-266 921.4 812 61.5
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.6e-264 916.4 922 55.9
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 8.6e-263 910.6 829 60.2
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 3.4e-243 845.5 816 55.0
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 2.9e-242 842.4 813 56.9
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 9.3e-241 837.4 820 54.9
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.7e-229 798.9 674 64.2
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 1.3e-226 790.4 663 64.6
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 2.2e-226 789.6 815 58.7
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.1e-222 777.3 816 52.9
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 1.1e-217 760.8 861 49.0
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.1e-201 707.6 594 62.8
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 2.2e-186 656.8 618 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 4.4e-166 589.3 765 44.2
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 4.4e-166 589.3 826 44.3
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 3.5e-163 579.7 791 43.2
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 4.4e-150 536.2 862 38.4
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.4e-148 531.2 538 54.5
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 3.6e-144 516.5 783 39.5
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 1.0e-138 498.4 839 38.6
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 6.6e-138 495.7 494 57.1
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 9.6e-137 491.9 377 66.6
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.1e-132 478.4 403 63.5
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.9e-132 477.6 324 73.8
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.8e-103 381.3 270 68.5
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 5.0e-101 373.2 466 48.5
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 6.7e-98 362.8 255 69.0
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.7e-91 340.9 275 60.4
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.4e-87 327.8 307 57.3
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 9.4e-76 289.3 238 65.5
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 4.4e-57 227.3 350 41.7
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 1.4e-55 222.2 805 26.5
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 1.5e-49 202.2 219 50.7
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.6e-41 174.9 163 54.6
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.6e-38 165.6 124 67.7
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 8.6e-37 159.8 847 21.5
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 5.6e-36 157.1 119 66.4
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 2.6e-33 148.3 93 75.3
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.7e-29 135.6 101 68.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 3.0e-29 134.8 192 41.1
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 2.8e-27 128.3 207 39.6
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.4e-23 115.2 70 85.7
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.4e-23 115.2 123 50.4
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 1.6e-22 112.5 110 56.4
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 5.1e-21 107.5 70 70.0
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 5.1e-21 107.5 70 70.0
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 2.8e-19 101.7 86 58.1
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 1.5e-17 95.9 148 41.2
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.1e-14 85.5 79 59.5
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 4.8e-11 74.3 67 55.2
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 5.3e-10 70.9 69 55.1
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 4.9e-08 64.3 47 70.2
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.9e-07 62.4 233 32.2


User provided reference genes

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