Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 1.3e-149 533.1 280 100.0
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 9.9e-118 427.2 290 81.4
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 2.1e-112 409.5 295 75.6
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 2.0e-89 333.2 295 64.1
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 1.4e-87 327.0 295 60.0
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 3.1e-87 325.9 294 63.6
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 4.1e-87 325.5 290 61.4
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 4.1e-87 325.5 290 64.8
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 2.0e-86 323.2 296 60.5
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 2.0e-86 323.2 290 64.5
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 5.9e-86 321.6 290 62.8
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.3e-85 320.5 294 60.5
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 2.9e-85 319.3 294 60.9
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 6.5e-85 318.2 294 59.2
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 8.5e-85 317.8 294 59.5
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.4e-84 317.0 296 59.5
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 4.2e-84 315.5 291 60.1
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 5.5e-84 315.1 297 59.3
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 5.5e-84 315.1 295 62.7
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 9.4e-84 314.3 296 60.8
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.6e-83 313.5 297 58.6
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 2.7e-83 312.8 295 60.7
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.0e-82 310.8 297 58.2
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 1.8e-82 310.1 297 59.3
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 3.9e-82 308.9 296 57.8
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 8.8e-82 307.8 298 59.4
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 1.1e-81 307.4 297 57.2
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.0e-81 306.6 297 56.9
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 2.6e-81 306.2 294 57.5
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.6e-81 306.2 298 58.7
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 4.4e-81 305.4 292 60.6
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 2.8e-80 302.8 298 58.1
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 1.8e-79 300.1 288 55.2
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 9.1e-79 297.7 294 58.2
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 4.5e-78 295.4 304 56.2
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 5.9e-78 295.0 201 81.1
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 1.7e-77 293.5 249 65.9
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 8.5e-77 291.2 292 55.8
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 8.5e-77 291.2 304 57.9
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 8.5e-77 291.2 295 55.6
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 1.1e-76 290.8 291 57.4
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.5e-76 289.7 273 58.2
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 7.2e-76 288.1 296 58.4
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 7.2e-76 288.1 296 54.4
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 9.4e-76 287.7 299 57.2
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.7e-75 286.2 253 60.5
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 4.7e-75 285.4 300 57.0
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 8.0e-75 284.6 294 56.8
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.4e-74 283.9 290 56.9
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 1.8e-74 283.5 294 56.8
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.8e-74 283.5 299 55.2
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 6.7e-74 281.6 289 56.7
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.1e-73 280.8 297 54.9
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 2.0e-73 280.0 296 54.1
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 4.4e-73 278.9 289 56.1
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 5.7e-73 278.5 292 54.1
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 9.7e-73 277.7 293 55.6
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.3e-72 277.3 263 60.1
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.3e-72 277.3 288 55.2
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 2.2e-72 276.6 290 53.8
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 2.2e-72 276.6 290 54.1
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.8e-72 276.2 289 56.1
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 2.8e-72 276.2 305 55.1
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.7e-72 275.8 289 56.1
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 3.7e-72 275.8 302 53.6
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 4.8e-72 275.4 291 54.3
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 8.2e-72 274.6 290 53.1
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 8.2e-72 274.6 290 53.1
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 1.4e-71 273.9 296 53.4
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 4.1e-71 272.3 290 53.8
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 5.3e-71 271.9 262 57.3
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 7.0e-71 271.6 290 54.5
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 2.0e-70 270.0 246 60.2
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 2.0e-70 270.0 250 59.2
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 3.5e-70 269.2 294 53.7
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 5.9e-70 268.5 313 51.1
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.0e-69 267.7 296 53.7
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 3.2e-68 262.7 298 50.3
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 3.2e-68 262.7 243 59.3
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 4.2e-68 262.3 241 60.6
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 9.4e-68 261.2 269 55.0
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.2e-67 260.8 267 55.8
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 2.1e-67 260.0 267 55.4
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 2.7e-67 259.6 283 55.8
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 3.6e-67 259.2 275 56.0
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 6.8e-66 255.0 267 54.7
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.0e-65 253.4 269 55.4
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 9.8e-65 251.1 265 55.1
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.7e-64 250.4 288 50.7
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 8.3e-64 248.1 270 53.0
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 2.4e-63 246.5 155 75.5
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.4e-63 246.5 245 56.3
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 4.1e-63 245.7 214 62.6
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 7.0e-63 245.0 269 52.0
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.0e-63 245.0 199 65.8
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.2e-62 244.2 240 57.9
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.6e-62 243.8 199 65.3
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 4.5e-62 242.3 244 57.4
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 3.6e-59 232.6 249 55.0
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.8e-58 230.3 264 48.1
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 5.9e-54 215.3 281 47.7
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.6e-51 207.2 167 64.1
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 1.8e-50 203.8 239 46.9
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 3.0e-50 203.0 230 48.7
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 4.0e-50 202.6 239 46.4
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 3.2e-47 193.0 257 44.7
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 7.0e-47 191.8 187 58.8
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 2.0e-46 190.3 183 60.1
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 2.0e-46 190.3 226 44.7
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 6.6e-45 185.3 152 58.6
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 8.6e-45 184.9 256 40.6
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 2.0e-41 173.7 146 57.5
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 2.7e-38 163.3 228 48.7
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 2.3e-37 160.2 242 39.3
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.4e-34 151.0 269 41.3
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.5e-33 147.5 126 57.9
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.9e-31 140.6 224 43.8
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 3.2e-31 139.8 196 42.3
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.4e-26 124.4 221 36.2
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 7.6e-25 118.6 70 81.4
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 9.2e-23 111.7 72 69.4
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 7.8e-22 108.6 72 68.1
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 1.3e-21 107.8 72 66.7
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 5.1e-21 105.9 125 48.0
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 1.2e-19 101.3 73 65.8
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.1e-18 96.7 102 55.9
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.1e-18 96.7 102 55.9
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 4.0e-18 96.3 102 54.9
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 4.0e-18 96.3 150 43.3
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 5.2e-18 95.9 102 55.9
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.2e-17 94.7 102 54.9
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 2.2e-16 90.5 105 48.6
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 3.8e-16 89.7 80 60.0
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.4e-15 87.8 130 44.6
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.4e-15 87.8 135 34.1
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 8.7e-13 78.6 54 74.1
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 3.6e-11 73.2 67 52.2
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.1e-10 71.6 60 60.0
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.7e-08 64.3 199 25.6
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 7.1e-07 58.9 31 90.3
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 6.0e-06 55.8 129 28.7


User provided reference genes

Program Settings