Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 1.6e-91 339.3 164 100.0
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 8.7e-90 333.6 164 98.2
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 1.4e-82 309.7 164 89.6
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 1.4e-74 283.1 140 96.4
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 3.1e-63 245.4 166 71.7
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 4.1e-63 245.0 164 73.2
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 4.1e-63 245.0 161 72.0
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 5.9e-62 241.1 165 71.5
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 6.5e-61 237.7 164 71.3
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 1.1e-60 236.9 166 69.9
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 1.9e-60 236.1 167 68.3
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 3.2e-60 235.3 167 69.5
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 4.2e-60 235.0 165 69.7
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 2.1e-59 232.6 164 69.5
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 2.7e-59 232.3 166 70.5
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 4.7e-59 231.5 167 68.3
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 1.4e-58 229.9 195 62.6
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 1.4e-58 229.9 170 65.9
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 1.8e-58 229.6 167 66.5
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 5.2e-58 228.0 161 67.7
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 6.8e-58 227.6 166 71.1
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 1.2e-57 226.9 164 65.9
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 1.5e-57 226.5 167 68.9
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.5e-57 226.5 165 67.9
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 2.0e-57 226.1 162 67.3
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 2.6e-57 225.7 165 66.7
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 4.4e-57 224.9 164 72.0
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 9.8e-57 223.8 164 65.9
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 1.3e-56 223.4 164 68.9
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 1.1e-55 220.3 164 67.1
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 3.1e-55 218.8 164 67.7
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 1.3e-53 213.4 166 65.1
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 2.9e-53 212.2 164 64.6
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 3.8e-53 211.8 164 62.8
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 7.2e-52 207.6 166 60.8
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 7.2e-52 207.6 167 64.1
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 9.5e-52 207.2 166 60.8
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 1.6e-51 206.5 166 60.8
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 6.1e-51 204.5 164 63.4
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 8.0e-51 204.1 164 64.6
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 1.4e-50 203.4 164 62.8
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 3.0e-50 202.2 172 61.0
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 6.8e-50 201.1 164 59.8
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 1.2e-49 200.3 166 62.7
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 3.4e-49 198.7 166 62.7
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 3.4e-49 198.7 161 62.7
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 4.4e-49 198.4 136 72.8
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 7.5e-49 197.6 164 60.4
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 9.8e-49 197.2 161 62.1
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 1.3e-48 196.8 164 63.4
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.7e-48 196.4 161 62.1
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 2.8e-48 195.7 165 59.4
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 6.3e-48 194.5 164 61.6
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 9.2e-47 190.7 144 66.7
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 1.6e-46 189.9 165 57.6
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 1.3e-45 186.8 133 68.4
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 2.3e-45 186.0 188 54.8
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 2.3e-45 186.0 162 58.0
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 2.9e-45 185.7 133 66.9
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 1.5e-44 183.3 156 59.6
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 1.9e-44 183.0 134 67.9
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 3.6e-43 178.7 163 57.7
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 1.4e-42 176.8 170 55.3
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 5.2e-42 174.9 176 51.7
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 8.9e-42 174.1 131 67.9
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 3.2e-39 165.6 137 60.6
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 2.0e-38 162.9 142 59.2
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 3.3e-36 155.6 128 62.5
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 1.2e-35 153.7 164 53.0
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 1.5e-33 146.7 136 58.8
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 9.2e-31 137.5 94 66.0
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 1.5e-28 130.2 110 58.2
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 6.2e-27 124.8 80 70.0
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 8.9e-26 120.9 164 43.3
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 1.2e-25 120.6 80 66.2
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 1.4e-23 113.6 161 38.5
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 3.0e-21 105.9 187 32.6
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 1.9e-20 103.2 84 61.9
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 3.3e-20 102.4 123 47.2
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 6.4e-16 88.2 84 57.1
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.2e-06 57.4 92 35.9
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 3.5e-06 55.8 90 35.6


User provided reference genes

Program Settings