Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 4.9e-101 371.3 212 100.0
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 3.2e-60 235.7 210 74.3
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 2.8e-48 196.1 193 69.9
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 1.7e-32 143.7 141 68.1
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 3.0e-18 96.3 116 50.9
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 4.0e-18 95.9 122 42.6
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 4.4e-17 92.4 116 59.5
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 7.5e-17 91.7 123 49.6
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 2.2e-16 90.1 133 38.3
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 4.9e-16 89.0 110 62.7
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 6.3e-16 88.6 109 54.1
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 8.3e-16 88.2 189 43.4
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.1e-15 87.8 122 54.1
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 2.4e-15 86.7 110 60.0
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 2.4e-15 86.7 127 52.8
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 4.1e-15 85.9 130 40.0
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 5.4e-15 85.5 108 56.5
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 5.4e-15 85.5 200 41.5
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 7.0e-15 85.1 114 56.1
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 7.0e-15 85.1 184 43.5
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 5.9e-14 82.0 112 39.3
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 5.9e-14 82.0 100 59.0
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 7.7e-14 81.6 136 39.7
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 7.7e-14 81.6 121 52.9
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 1.0e-13 81.3 110 56.4
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 1.0e-13 81.3 121 50.4
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 2.9e-13 79.7 188 37.2
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 5.0e-13 79.0 202 38.1
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 6.6e-13 78.6 202 38.1
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 8.6e-13 78.2 104 52.9
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 1.1e-12 77.8 118 55.1
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 1.9e-12 77.0 110 56.4
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 1.9e-12 77.0 137 45.3
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 2.5e-12 76.6 131 45.0
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 3.3e-12 76.3 100 38.0
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 3.3e-12 76.3 206 30.6
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 4.3e-12 75.9 208 34.1
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 4.3e-12 75.9 108 53.7
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 4.3e-12 75.9 110 52.7
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 5.6e-12 75.5 127 45.7
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 5.6e-12 75.5 127 48.8
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 7.3e-12 75.1 194 36.6
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 7.3e-12 75.1 206 30.1
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 7.3e-12 75.1 121 49.6
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 9.5e-12 74.7 177 36.2
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 9.5e-12 74.7 133 48.9
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 1.2e-11 74.3 108 54.6
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 1.2e-11 74.3 113 38.9
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 1.6e-11 73.9 113 52.2
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 1.6e-11 73.9 126 50.0
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 4.7e-11 72.4 100 56.0
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 4.7e-11 72.4 135 43.0
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 8.0e-11 71.6 120 50.8
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 8.0e-11 71.6 123 48.8
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 1.0e-10 71.2 110 47.3
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 1.4e-10 70.9 117 50.4
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 1.8e-10 70.5 103 54.4
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 3.0e-10 69.7 108 50.0
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 4.0e-10 69.3 170 32.9
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 5.2e-10 68.9 107 46.7
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 6.8e-10 68.6 119 43.7
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 1.5e-09 67.4 133 36.1
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 2.0e-09 67.0 115 34.8
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 2.6e-09 66.6 137 44.5
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 2.6e-09 66.6 103 35.9
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 3.4e-09 66.2 138 29.7
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 4.4e-09 65.9 105 43.8
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 5.7e-09 65.5 123 34.1
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 5.7e-09 65.5 188 28.7
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 7.5e-09 65.1 107 50.5
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 7.5e-09 65.1 133 37.6
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 9.8e-09 64.7 188 28.2
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 1.3e-08 64.3 110 51.8
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 1.3e-08 64.3 162 41.4
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.2e-08 63.5 134 44.0
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 2.2e-08 63.5 103 51.5
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 2.9e-08 63.2 126 30.2
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 3.7e-08 62.8 121 44.6
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.9e-08 62.4 134 44.0
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 4.9e-08 62.4 127 50.4
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 8.3e-08 61.6 134 43.3
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 1.1e-07 61.2 107 50.5
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 1.4e-07 60.8 92 34.8
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 1.4e-07 60.8 130 35.4
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 1.4e-07 60.8 133 42.1
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 2.4e-07 60.1 115 39.1
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 4.1e-07 59.3 102 51.0
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 5.4e-07 58.9 103 46.6
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 7.0e-07 58.5 106 49.1
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 7.0e-07 58.5 113 39.8
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 7.0e-07 58.5 106 31.1
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 7.0e-07 58.5 105 45.7
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 1.2e-06 57.8 197 31.0
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 1.2e-06 57.8 106 42.5
Zm00001eb027840 Zea mays HOM05D007310 ORTHO05D002375 1.2e-06 57.8 123 38.2
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 1.6e-06 57.4 114 41.2
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.6e-06 57.4 106 38.7
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 1.6e-06 57.4 120 42.5
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 2.0e-06 57.0 86 48.8
Actinidia10351 Actinidia chinensis HOM05D007310 ORTHO05D002375 2.7e-06 56.6 98 52.0
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 4.6e-06 55.8 118 43.2
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 4.6e-06 55.8 164 32.9
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 5.9e-06 55.5 131 35.9
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 5.9e-06 55.5 131 35.9
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 5.9e-06 55.5 137 40.9
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 7.8e-06 55.1 98 45.9


User provided reference genes

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