Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 0.0e+00 1438.3 710 100.0
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 0.0e+00 1347.0 706 93.9
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 0.0e+00 1303.5 700 91.0
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 0.0e+00 1237.6 702 85.6
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 5.5e-298 1027.3 714 69.9
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 1.6e-297 1025.8 701 70.3
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 1.5e-295 1019.2 708 69.8
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 4.5e-292 1007.7 713 69.1
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 7.7e-292 1006.9 701 69.6
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 2.2e-291 1005.4 710 67.5
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 3.6e-289 998.0 735 65.3
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 6.1e-289 997.3 707 68.3
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 6.7e-288 993.8 710 67.9
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 5.3e-285 984.2 709 67.7
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 1.0e-283 979.9 708 67.1
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 1.0e-283 979.9 709 67.6
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 5.0e-283 977.6 773 62.0
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 1.9e-282 975.7 710 68.6
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 3.0e-280 968.4 704 67.3
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 6.8e-280 967.2 703 66.3
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 1.2e-279 966.5 711 67.7
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 3.4e-279 964.9 749 64.5
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 4.4e-279 964.5 708 66.2
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 5.7e-279 964.1 707 66.3
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 1.3e-278 963.0 705 66.5
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 2.8e-278 961.8 703 66.3
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 1.8e-277 959.1 708 66.2
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 5.9e-276 954.1 708 66.5
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 1.3e-275 953.0 703 65.1
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 3.8e-275 951.4 714 65.3
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 8.5e-275 950.3 746 63.7
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 8.5e-275 950.3 703 66.0
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 1.1e-274 949.9 704 65.3
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 2.5e-274 948.7 713 65.6
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 3.6e-273 944.9 731 62.9
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 3.6e-273 944.9 711 63.6
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 6.1e-273 944.1 708 64.3
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 3.0e-272 941.8 707 63.5
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 3.0e-272 941.8 715 65.6
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 6.8e-272 940.6 707 65.2
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 2.6e-271 938.7 705 64.5
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 5.7e-271 937.6 701 64.2
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 2.2e-270 935.6 708 63.7
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 5.4e-269 931.0 676 66.4
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.6e-268 929.5 708 63.6
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 1.6e-268 929.5 710 64.5
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 1.6e-268 929.5 707 63.5
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.0e-268 929.1 669 68.2
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 2.7e-268 928.7 704 64.5
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 2.7e-268 928.7 708 64.0
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 1.0e-267 926.8 709 64.5
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 1.7e-267 926.0 709 64.3
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 2.9e-267 925.2 706 63.3
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 8.6e-267 923.7 706 63.0
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 8.6e-267 923.7 686 65.5
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 1.9e-266 922.5 709 64.0
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 3.3e-266 921.8 708 63.0
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 5.6e-266 921.0 708 65.1
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 9.5e-266 920.2 709 62.8
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 2.1e-265 919.1 709 63.9
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 6.1e-265 917.5 670 65.5
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 6.1e-265 917.5 651 67.1
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 7.5e-263 910.6 662 66.6
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 3.7e-262 908.3 757 61.0
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 8.3e-262 907.1 725 62.1
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 5.4e-261 904.4 725 61.9
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 3.5e-260 901.7 708 63.0
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 2.3e-259 899.0 706 61.8
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 1.9e-258 896.0 694 62.2
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 1.9e-258 896.0 658 64.7
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 2.6e-255 885.6 611 69.4
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 7.5e-255 884.0 657 64.5
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.5e-250 869.8 686 62.2
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 1.2e-249 866.7 646 65.3
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 1.2e-247 860.1 662 62.5
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 9.2e-245 850.5 709 60.5
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 3.5e-244 848.6 685 61.3
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 1.2e-241 840.1 696 59.3
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 2.8e-241 839.0 706 59.6
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 3.1e-240 835.5 703 59.9
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 8.9e-240 833.9 658 61.6
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 2.2e-238 829.3 697 59.1
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 1.7e-230 803.1 1005 45.5
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 4.0e-224 781.9 693 56.3
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 9.0e-224 780.8 545 68.3
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 2.0e-223 779.6 614 63.5
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 2.7e-220 769.2 555 67.7
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 4.3e-218 761.9 628 60.7
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 7.4e-218 761.1 534 68.9
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 2.1e-217 759.6 708 55.6
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 8.7e-211 737.6 563 62.3
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 7.6e-207 724.5 664 56.0
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 6.5e-206 721.5 512 67.4
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 3.2e-205 719.2 670 55.2
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 1.8e-192 676.8 578 58.7
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 5.9e-183 645.2 639 53.4
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 7.7e-183 644.8 429 70.9
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 8.8e-179 631.3 658 49.5
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 2.6e-178 629.8 670 47.3
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 7.5e-154 548.5 439 60.4
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 2.9e-150 536.6 389 67.1
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.3e-147 526.9 390 63.3
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 9.5e-133 478.4 497 47.7
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 1.2e-130 471.5 385 59.5
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 5.2e-123 446.0 387 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 5.4e-120 436.0 436 50.0
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 1.2e-114 418.3 324 62.7
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.5e-109 401.4 331 58.3
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 2.4e-99 367.5 274 63.9
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 6.9e-99 365.9 321 58.3
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 7.6e-98 362.5 272 66.5
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 9.3e-96 355.5 628 37.4
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 4.0e-91 340.1 358 50.8
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 9.0e-83 312.4 238 59.2
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 9.4e-80 302.4 234 62.4
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.4e-72 278.5 285 53.0
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 4.2e-72 276.9 648 32.6
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-70 271.9 392 37.8
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 5.3e-67 260.0 423 35.2
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 5.3e-59 233.4 537 30.5
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 3.7e-44 184.1 351 37.0
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 1.5e-40 172.2 276 35.5
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 5.2e-38 163.7 138 59.4
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 2.8e-36 157.9 99 73.7
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 7.0e-35 153.3 117 70.1
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 7.8e-34 149.8 214 41.1
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.9e-32 145.2 222 38.7
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.4e-30 139.0 215 39.1
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 1.3e-28 132.5 103 63.1
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 7.0e-27 126.7 133 52.6
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 8.0e-23 113.2 83 59.0
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 8.0e-23 113.2 80 62.5
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 1.4e-19 102.4 173 39.3
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 4.6e-18 97.4 399 27.3
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 1.2e-15 89.4 443 23.7
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 4.7e-15 87.4 394 24.1
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.8e-14 85.5 88 46.6
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 8.9e-14 83.2 60 71.7
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.6e-13 81.6 64 59.4
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 9.9e-13 79.7 46 73.9
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.7e-12 77.8 53 62.3
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.7e-12 77.8 46 71.7
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.1e-11 74.3 46 69.6
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 5.4e-11 73.9 86 40.7
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.2e-10 72.8 50 64.0
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 6.6e-09 67.0 57 57.9
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 1.2e-07 62.8 212 31.1
Mapoly0001s0419 Marchantia polymorpha HOM05D010140 ORTHO05D011490 1.6e-07 62.4 383 23.2
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 8.1e-07 60.1 454 22.2
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 8.9e-06 56.6 222 27.5
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 8.9e-06 56.6 45 57.8


User provided reference genes

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