Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 1.4e-93 346.3 180 100.0
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 5.3e-88 327.8 180 95.6
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.6e-73 279.6 176 85.2
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 4.1e-72 275.0 182 80.2
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 9.7e-66 253.8 173 77.5
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 1.4e-43 180.3 192 58.9
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 6.3e-41 171.4 192 54.2
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 1.2e-39 167.2 184 54.9
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 1.2e-39 167.2 185 56.8
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 2.7e-39 166.0 181 58.0
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 1.0e-38 164.1 185 56.8
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 1.3e-38 163.7 193 53.9
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 1.7e-38 163.3 192 53.1
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 4.2e-37 158.7 187 56.1
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 1.2e-36 157.1 183 53.0
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 2.1e-36 156.4 191 51.3
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 2.1e-36 156.4 183 53.0
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 3.0e-35 152.5 189 51.3
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 3.0e-35 152.5 193 52.3
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 5.2e-35 151.8 180 52.8
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 1.2e-34 150.6 191 50.3
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 2.0e-34 149.8 198 50.0
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 5.7e-34 148.3 190 51.1
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 9.8e-34 147.5 182 52.7
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 3.7e-33 145.6 190 50.0
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 6.3e-33 144.8 179 52.5
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 6.3e-33 144.8 188 51.1
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 8.3e-33 144.4 185 49.7
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 4.1e-32 142.1 178 51.1
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.2e-31 140.6 180 50.6
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.2e-31 140.6 182 51.1
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.7e-31 139.4 189 50.3
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 3.5e-31 139.0 198 47.0
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 3.5e-31 139.0 189 50.3
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 3.5e-31 139.0 189 50.3
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 2.3e-30 136.3 175 50.9
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 6.5e-30 134.8 190 45.8
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 1.1e-29 134.0 184 47.3
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 1.5e-29 133.7 177 52.0
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 1.9e-29 133.3 181 48.6
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 2.5e-29 132.9 236 42.4
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 4.2e-29 132.1 193 46.1
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 4.2e-29 132.1 193 43.5
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 5.5e-29 131.7 188 47.3
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 7.2e-29 131.3 201 46.8
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.6e-28 130.2 206 45.6
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 2.1e-28 129.8 177 47.5
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 8.0e-28 127.9 190 46.3
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 8.0e-28 127.9 190 46.3
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 8.0e-28 127.9 181 47.5
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 1.8e-27 126.7 180 48.3
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 2.3e-27 126.3 160 52.5
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 2.3e-27 126.3 185 47.6
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 2.3e-27 126.3 178 47.8
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 8.8e-27 124.4 185 47.0
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 8.8e-27 124.4 178 46.1
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 2.0e-26 123.2 186 43.0
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 3.4e-26 122.5 191 48.2
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 3.4e-26 122.5 179 45.8
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 3.4e-26 122.5 176 43.8
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 3.4e-26 122.5 177 47.5
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 4.9e-25 118.6 192 44.8
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 4.9e-25 118.6 170 48.2
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 8.3e-25 117.9 192 44.8
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 8.3e-25 117.9 187 44.9
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 1.1e-24 117.5 180 45.0
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.4e-24 117.1 187 44.9
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 2.4e-24 116.3 178 43.8
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 4.1e-24 115.5 185 43.2
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 7.0e-24 114.8 193 39.4
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.6e-23 113.6 192 42.7
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 7.8e-23 111.3 182 44.5
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 8.6e-22 107.8 177 42.4
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.1e-21 107.5 172 44.2
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 1.0e-19 100.9 109 51.4
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 1.4e-19 100.5 174 44.3
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 6.8e-19 98.2 177 41.8
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.2e-18 97.4 114 53.5
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 3.4e-18 95.9 192 38.5
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 1.7e-17 93.6 194 38.7
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.1e-16 90.9 134 44.0
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 1.1e-16 90.9 175 41.1
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 7.0e-16 88.2 190 37.9
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 1.6e-15 87.0 99 53.5
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 4.6e-15 85.5 183 37.7
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 5.9e-15 85.1 196 34.7
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 7.8e-15 84.7 156 42.9
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 5.0e-14 82.0 141 44.0
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 5.0e-14 82.0 180 37.8
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 6.6e-14 81.6 118 46.6
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 1.1e-13 80.9 154 40.9
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 1.9e-13 80.1 161 37.3
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 2.5e-13 79.7 139 44.6
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 2.5e-13 79.7 134 44.8
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 2.5e-13 79.7 134 44.8
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 2.5e-13 79.7 67 64.2
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 9.5e-13 77.8 136 41.9
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 9.5e-13 77.8 131 43.5
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 1.6e-12 77.0 131 43.5
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 2.1e-12 76.6 156 37.8
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 1.1e-11 74.3 158 38.0
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 1.8e-11 73.6 141 40.4
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 1.8e-11 73.6 133 42.9
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 2.3e-11 73.2 178 33.7
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 3.1e-11 72.8 116 43.1
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 7.5e-10 68.2 159 36.5
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 9.8e-10 67.8 173 34.7
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 6.4e-09 65.1 172 34.9
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 1.2e-07 60.8 99 44.4
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 2.0e-07 60.1 71 46.5
Zm00001eb379630 Zea mays HOM05D042818 ORTHO05D008062 1.7e-06 57.0 196 33.2
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.3e-06 56.6 145 42.1


User provided reference genes

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