Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 0.0e+00 1288.1 662 100.0
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 0.0e+00 1198.7 663 93.4
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 0.0e+00 1135.6 663 88.2
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 2.0e-278 962.2 668 76.6
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 9.0e-186 654.4 673 56.3
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 4.6e-182 642.1 669 55.6
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 8.8e-181 637.9 674 54.5
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 2.0e-180 636.7 669 54.4
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 5.7e-180 635.2 671 53.9
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 9.4e-175 617.8 656 54.0
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.4e-170 604.0 675 53.2
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 9.1e-170 601.3 709 49.4
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 7.7e-169 598.2 673 51.6
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.7e-168 597.0 710 49.2
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 4.2e-167 592.4 730 48.5
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 4.7e-166 589.0 723 48.5
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 6.1e-166 588.6 740 47.4
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 8.0e-166 588.2 710 48.9
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 2.3e-165 586.6 716 49.3
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 8.8e-165 584.7 706 50.1
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.5e-164 583.9 664 50.6
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 9.7e-164 581.3 720 49.3
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 8.2e-163 578.2 665 50.7
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 5.3e-162 575.5 681 50.8
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 7.0e-162 575.1 715 48.8
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 9.1e-162 574.7 716 47.9
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 4.5e-161 572.4 719 48.0
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 2.9e-160 569.7 701 48.5
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 3.8e-160 569.3 722 47.6
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.5e-159 567.4 719 47.3
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 2.1e-158 563.5 715 47.7
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 1.0e-157 561.2 673 50.1
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 1.4e-157 560.8 670 49.6
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 2.3e-157 560.1 672 49.6
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 3.0e-157 559.7 642 50.8
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 4.0e-157 559.3 694 47.7
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 8.8e-157 558.1 674 47.5
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 3.4e-156 556.2 668 48.4
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 2.8e-155 553.1 738 46.9
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 2.8e-155 553.1 718 46.8
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 5.3e-154 548.9 719 47.0
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 7.0e-154 548.5 673 49.5
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 9.1e-154 548.1 707 46.8
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 9.1e-154 548.1 711 47.1
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.2e-153 547.7 678 48.1
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 2.0e-153 547.0 732 46.3
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 7.7e-153 545.0 714 45.7
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.3e-152 544.3 655 49.0
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 5.0e-152 542.3 673 48.4
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 5.0e-152 542.3 665 47.4
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 2.5e-151 540.0 795 43.5
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 9.4e-151 538.1 725 46.3
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 1.2e-150 537.7 715 46.7
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.4e-149 534.3 672 46.6
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 2.3e-149 533.5 767 44.6
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 5.2e-149 532.3 678 47.5
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 1.5e-148 530.8 735 45.4
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 4.4e-148 529.3 762 44.4
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 9.8e-148 528.1 721 45.4
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 2.2e-147 526.9 663 47.4
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 7.0e-146 521.9 770 43.6
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 9.1e-146 521.5 727 45.0
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 1.6e-145 520.8 725 44.3
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 2.0e-145 520.4 670 47.0
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 1.7e-144 517.3 702 45.4
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 1.1e-143 514.6 673 47.1
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 8.0e-142 508.4 707 44.7
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 1.8e-141 507.3 671 46.2
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 5.2e-141 505.8 659 47.5
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 5.7e-140 502.3 582 51.9
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 1.3e-139 501.1 671 45.0
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 1.1e-138 498.0 673 45.3
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.0e-133 481.5 728 43.3
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 4.0e-133 479.6 728 43.3
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.6e-129 467.6 717 41.6
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 2.0e-129 467.2 674 43.2
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.7e-129 466.8 732 43.2
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 4.6e-129 466.1 670 43.9
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.9e-128 463.0 683 42.8
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 4.3e-127 459.5 680 44.0
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 5.6e-127 459.1 740 41.4
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 7.3e-127 458.8 743 41.2
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.6e-126 457.6 745 41.5
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 6.8e-125 452.2 762 40.2
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.2e-124 451.4 682 41.6
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.7e-123 446.4 703 43.1
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 1.6e-121 441.0 738 41.3
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 2.8e-118 430.3 649 41.4
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 1.1e-117 428.3 632 42.7
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.8e-117 427.6 763 39.7
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 8.9e-117 425.2 615 42.8
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 7.1e-114 415.6 861 35.9
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 9.6e-111 405.2 707 40.6
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 8.9e-109 398.7 651 41.6
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 3.9e-104 383.3 822 34.7
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.9e-103 380.9 510 48.2
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 4.3e-103 379.8 831 35.3
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 9.6e-103 378.6 852 34.5
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 8.1e-102 375.6 854 34.7
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.9e-101 372.5 664 38.7
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 4.6e-97 359.8 728 36.4
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 1.3e-94 351.7 478 46.0
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 1.9e-90 337.8 826 34.1
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 1.3e-78 298.5 689 34.7
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 6.2e-78 296.2 666 34.5
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 6.9e-77 292.7 692 34.4
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 1.5e-76 291.6 519 39.5
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.7e-67 261.5 672 33.3
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 7.2e-66 256.1 347 42.9
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 2.3e-64 251.1 329 45.9
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.1e-61 242.3 628 33.0
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 1.4e-61 241.9 716 28.4
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 2.3e-56 224.6 644 28.4
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 8.2e-54 216.1 341 40.5
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 2.2e-51 208.0 190 54.7
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.0e-48 199.1 649 31.0
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 4.8e-46 190.3 885 23.8
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.1e-45 187.2 269 41.3
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 9.1e-45 186.0 667 27.4
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 3.8e-35 154.1 128 60.2
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 5.0e-35 153.7 170 47.1
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 5.0e-35 153.7 170 47.1
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.1e-34 152.5 173 46.8
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 5.5e-34 150.2 323 29.4
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 8.0e-33 146.4 139 59.0
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 3.4e-23 114.4 231 37.2
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.5e-20 104.4 103 49.5
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 4.6e-20 104.0 82 65.9
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 1.5e-15 89.0 109 42.2
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.4e-15 87.4 103 45.6
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 9.8e-15 86.3 100 45.0
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 1.2e-09 69.3 54 64.8
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 5.8e-07 60.5 156 36.5
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 8.3e-06 56.6 96 46.9


User provided reference genes

Program Settings