Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 1.9e-193 679.1 371 100.0
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.5e-174 616.3 358 94.7
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 3.4e-166 588.6 356 91.3
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 2.5e-148 529.3 358 81.8
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 6.3e-128 461.5 361 75.3
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 3.4e-89 332.8 370 60.3
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 5.4e-87 325.5 371 60.4
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 2.3e-82 310.1 371 59.0
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 2.2e-80 303.5 367 56.7
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 9.2e-79 298.1 362 55.2
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 1.0e-77 294.7 365 54.0
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 1.9e-76 290.4 365 54.5
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 2.5e-76 290.0 361 57.1
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 5.6e-76 288.9 365 55.6
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 1.2e-75 287.7 368 56.0
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.8e-75 286.6 365 54.8
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 3.1e-74 283.1 374 55.3
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 4.0e-74 282.7 358 53.1
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.2e-73 281.2 372 51.9
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 3.4e-73 279.6 308 60.7
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 2.2e-72 276.9 369 53.1
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 2.9e-72 276.6 341 55.1
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.9e-71 273.9 363 52.1
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.2e-71 273.1 356 54.2
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 7.1e-71 271.9 367 53.7
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.2e-70 271.2 357 54.3
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 4.6e-70 269.2 362 52.5
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 4.6e-70 269.2 365 51.8
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.7e-69 267.3 342 56.4
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 2.3e-69 266.9 367 51.0
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 5.1e-69 265.8 365 51.5
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 6.6e-69 265.4 364 53.6
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.1e-68 264.6 331 54.7
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.3e-68 263.1 364 52.2
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 7.3e-68 261.9 372 50.3
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.6e-67 260.8 368 51.6
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 2.8e-67 260.0 371 49.6
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 4.7e-67 259.2 356 51.1
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 6.2e-67 258.8 346 52.3
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 8.1e-67 258.5 355 51.8
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 1.4e-66 257.7 359 50.4
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 8.9e-66 255.0 392 48.7
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 4.4e-65 252.7 364 50.0
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.2e-64 250.4 366 50.5
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 3.8e-64 249.6 269 59.5
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 4.9e-64 249.2 348 52.9
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.9e-64 249.2 364 48.6
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 8.4e-64 248.4 363 50.7
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 1.1e-63 248.1 347 52.7
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.1e-63 248.1 365 50.7
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.4e-63 247.7 356 49.7
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.2e-63 246.1 357 52.1
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 9.3e-63 245.0 350 53.7
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.1e-62 243.8 378 49.5
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.1e-62 243.8 375 49.6
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.6e-62 242.7 360 47.8
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 4.6e-62 242.7 375 48.5
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 6.0e-62 242.3 275 58.5
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.0e-61 241.5 355 52.4
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.3e-61 241.1 375 48.8
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 3.0e-61 240.0 366 48.4
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.5e-60 236.9 372 49.5
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 9.6e-60 235.0 367 51.5
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 2.1e-59 233.8 402 47.5
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 3.6e-59 233.0 373 50.1
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 3.6e-59 233.0 351 49.6
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 3.6e-59 233.0 364 47.5
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 6.2e-59 232.3 378 47.6
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 6.2e-59 232.3 371 46.9
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 8.1e-59 231.9 376 47.1
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.4e-58 231.1 303 52.1
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 9.0e-58 228.4 325 48.6
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 9.0e-58 228.4 351 47.0
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.2e-57 228.0 365 47.7
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-57 228.0 340 52.6
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 2.0e-57 227.3 368 48.4
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 3.4e-57 226.5 339 50.1
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.3e-56 224.6 344 47.1
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 2.9e-56 223.4 360 46.9
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 3.8e-56 223.0 338 50.0
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 4.9e-56 222.6 313 50.5
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 6.4e-56 222.2 335 49.6
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 8.4e-56 221.9 365 45.2
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 1.1e-55 221.5 363 46.3
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 2.4e-55 220.3 334 47.6
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 3.5e-54 216.5 371 45.6
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 7.9e-54 215.3 359 44.0
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 1.3e-53 214.5 350 47.1
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 3.0e-53 213.4 335 47.8
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 3.0e-53 213.4 372 46.2
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 3.0e-53 213.4 372 44.9
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 3.0e-53 213.4 361 46.8
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 8.7e-53 211.8 288 53.5
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 1.9e-52 210.7 360 47.2
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 4.3e-52 209.5 369 46.3
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 1.3e-51 208.0 363 44.4
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.6e-51 207.6 353 45.9
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 3.1e-50 203.4 401 43.4
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 5.3e-50 202.6 369 44.2
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.3e-48 198.0 366 44.3
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 2.2e-48 197.2 357 45.9
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 3.8e-48 196.4 343 46.1
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 4.9e-48 196.1 366 44.8
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 6.4e-48 195.7 363 43.8
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 8.4e-48 195.3 359 44.6
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 5.5e-47 192.6 251 50.6
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 2.1e-46 190.7 317 47.9
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 4.3e-44 183.0 372 41.1
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 6.2e-43 179.1 316 44.6
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 5.3e-42 176.0 378 41.0
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 5.3e-42 176.0 363 42.7
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 9.0e-42 175.3 311 43.4
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 3.8e-40 169.9 360 43.1
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 2.5e-39 167.2 341 44.0
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 5.5e-39 166.0 332 42.2
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 3.0e-37 160.2 349 38.4
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 1.5e-36 157.9 355 41.1
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 5.7e-36 156.0 391 36.1
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 1.3e-35 154.8 252 44.4
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.1e-34 151.8 338 40.8
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 4.1e-34 149.8 283 40.3
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 9.0e-34 148.7 340 38.8
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 5.9e-33 146.0 344 39.2
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.7e-32 144.4 377 36.6
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 5.0e-32 142.9 381 36.7
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 5.0e-32 142.9 342 39.2
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.4e-31 141.4 342 38.0
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 6.1e-30 136.0 374 36.9
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 9.7e-28 128.6 385 35.8
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 9.7e-28 128.6 385 35.8
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 9.7e-28 128.6 385 35.8
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 2.5e-23 114.0 181 47.0
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 9.1e-18 95.5 478 28.2
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 3.5e-09 67.0 102 41.2
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 7.7e-09 65.9 97 40.2
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.3e-08 65.1 132 35.6
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 3.8e-08 63.5 94 39.4
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 3.8e-08 63.5 129 36.4
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 8.5e-08 62.4 243 30.5
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 1.1e-07 62.0 84 39.3
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 1.1e-07 62.0 146 34.9
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 1.5e-07 61.6 124 32.3
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 1.9e-07 61.2 158 28.5
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 1.9e-07 61.2 79 43.0
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 2.5e-07 60.8 84 36.9
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 3.2e-07 60.5 68 45.6
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 4.2e-07 60.1 259 27.4
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 4.2e-07 60.1 49 65.3
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 4.2e-07 60.1 113 38.9
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 5.5e-07 59.7 143 32.9
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 5.5e-07 59.7 174 31.6
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 7.2e-07 59.3 257 26.1
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 7.2e-07 59.3 222 29.3
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 1.2e-06 58.5 139 30.9
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 1.2e-06 58.5 232 28.0
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 2.1e-06 57.8 218 31.2
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 3.6e-06 57.0 173 29.5
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 3.6e-06 57.0 200 28.0
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 3.6e-06 57.0 59 45.8
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 4.7e-06 56.6 158 32.9
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 4.7e-06 56.6 216 27.3
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 6.1e-06 56.2 237 28.3
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 8.0e-06 55.8 206 28.2


User provided reference genes

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