Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016443.2 Cucumis melo HOM05D006925 ORTHO05D008830 4.7e-161 571.2 308 100.0
ClCG10G007640 Citrullus lanatus HOM05D006925 ORTHO05D008830 4.8e-97 358.6 285 74.0
CsaV3_3G006780 Cucumis sativus L. HOM05D006925 ORTHO05D008830 2.2e-94 349.7 290 73.8
Sed0012673 Sechium edule HOM05D006925 ORTHO05D008830 6.7e-91 338.2 296 68.2
Dinv30983 Davidia involucrata HOM05D006925 ORTHO05D008830 3.0e-83 312.8 166 88.0
Manes.06G015100 Manihot esculenta HOM05D006925 ORTHO05D008830 5.1e-83 312.0 178 82.6
Cfa004416 Carpinus fangiana HOM05D006925 ORTHO05D008830 1.1e-82 310.8 166 86.1
GSVIVG01023121001 Vitis vinifera HOM05D006925 ORTHO05D008830 3.3e-82 309.3 166 87.3
COL.COLO4_31098 Corchorus olitorius HOM05D006925 ORTHO05D008830 8.2e-81 304.7 166 86.7
Hma1.2p1_0157F.1_g069250 Hydrangea macrophylla HOM05D006925 ORTHO05D008830 1.4e-80 303.9 166 84.9
QL02p103778 Quercus lobata HOM05D006925 ORTHO05D008830 1.4e-80 303.9 166 84.3
THA.LOC104824095 Tarenaya hassleriana HOM05D006925 ORTHO05D008830 1.4e-80 303.9 166 82.5
Gohir.A10G068400 Gossypium hirsutum HOM05D006925 ORTHO05D008830 1.8e-80 303.5 166 86.1
CiPaw.05G000400 Carya illinoinensis HOM05D006925 ORTHO05D008830 5.3e-80 302.0 166 86.1
Thecc.06G062200 Theobroma cacao HOM05D006925 ORTHO05D008830 5.3e-80 302.0 166 84.9
Gohir.D10G082800 Gossypium hirsutum HOM05D006925 ORTHO05D008830 9.0e-80 301.2 166 85.5
Gorai.011G089700 Gossypium raimondii HOM05D006925 ORTHO05D008830 9.0e-80 301.2 166 85.5
HanXRQChr03g0071141 Helianthus annuus HOM05D006925 ORTHO05D008830 9.0e-80 301.2 167 84.4
MBI06_g17054_MAGBIO Magnolia biondii HOM05D006925 ORTHO05D008830 1.2e-79 300.8 166 84.9
Nn5g27113 Nelumbo nucifera HOM05D006925 ORTHO05D008830 2.0e-79 300.1 166 83.1
Lsat_1_v5_gn_7_69720 Lactuca sativa HOM05D006925 ORTHO05D008830 4.5e-79 298.9 167 85.0
Ah.02g128580 Amaranthus hybridus HOM05D006925 ORTHO05D008830 5.9e-79 298.5 166 83.1
MSTRG.16455 Avicennia marina HOM05D006925 ORTHO05D008830 5.9e-79 298.5 166 81.9
CSS0004280 Camellia sinensis var. sinensis HOM05D006925 ORTHO05D008830 5.9e-79 298.5 166 84.9
CSS0028149 Camellia sinensis var. sinensis HOM05D006925 ORTHO05D008830 5.9e-79 298.5 166 84.9
FAN13G1230 Fragaria x ananassa HOM05D006925 ORTHO05D008830 1.0e-78 297.7 188 75.5
Duzib160G0166 Durio zibethinus HOM05D006925 ORTHO05D008830 2.2e-78 296.6 165 84.8
CDE05G0936 Ceratophyllum demersum HOM05D006925 ORTHO05D008830 5.0e-78 295.4 167 80.8
Potri.003G046600 Populus trichocarpa HOM05D006925 ORTHO05D008830 5.0e-78 295.4 207 69.6
Sabra03G0019700 Salix brachista HOM05D006925 ORTHO05D000812 6.5e-78 295.0 207 69.1
Haze_09956 Corylus avellana HOM05D006925 ORTHO05D008830 1.1e-77 294.3 182 77.5
ATR1089G139 Amborella trichopoda HOM05D006925 ORTHO05D008830 1.4e-77 293.9 166 81.3
TWI14G0460 Tripterygium wilfordii HOM05D006925 ORTHO05D008830 1.9e-77 293.5 166 83.1
DCAR_004828 Daucus carota HOM05D006925 ORTHO05D008830 9.4e-77 291.2 166 82.5
Nitab4.5_0002274g0030 Nicotiana tabacum HOM05D006925 ORTHO05D008830 9.4e-77 291.2 166 81.9
Eucgr.G00053 Eucalyptus grandis HOM05D006925 ORTHO05D008830 1.2e-76 290.8 167 82.6
ECA248G0237 Erigeron canadensis HOM05D002199 ORTHO05D007829 1.6e-76 290.4 167 82.0
FAN08G3037 Fragaria x ananassa HOM05D006925 ORTHO05D008830 1.6e-76 290.4 166 81.3
FAN18G1352 Fragaria x ananassa HOM05D006925 ORTHO05D008830 1.6e-76 290.4 166 81.3
Peaxi162Scf00055g00018 Petunia axillaris HOM05D006925 ORTHO05D008830 1.6e-76 290.4 166 81.9
AL5G11640 Arabidopsis lyrata HOM05D006925 ORTHO05D008830 2.7e-76 289.7 167 80.2
Cc02_g23820 Coffea canephora HOM05D006925 ORTHO05D008830 2.7e-76 289.7 167 83.2
AUR62032491 Chenopodium quinoa HOM05D006925 ORTHO05D008830 3.6e-76 289.3 180 76.1
PGR042G2053 Punica granatum HOM05D006925 ORTHO05D008830 3.6e-76 289.3 166 80.7
Sc03g0005610 Simmondsia chinensis HOM05D006925 ORTHO05D008830 3.6e-76 289.3 166 81.3
FvH4_5g27220 Fragaria vesca HOM05D006925 ORTHO05D008830 4.6e-76 288.9 166 80.7
RcHm_v2.0_Chr7g0218321 Rosa chinensis HOM05D006925 ORTHO05D008830 4.6e-76 288.9 166 81.3
BcaC06g31233 Brassica carinata HOM05D006925 ORTHO05D008830 7.9e-76 288.1 167 79.6
CANSAT01G0563 Cannabis sativa HOM05D006925 ORTHO05D008830 1.4e-75 287.3 166 80.1
unitig_8.g4519 Utricularia gibba HOM05D006925 ORTHO05D008830 1.4e-75 287.3 166 79.5
Thhalv10004663m.g Eutrema salsugineum HOM05D006925 ORTHO05D008830 2.3e-75 286.6 167 78.4
BcaC06g34054 Brassica carinata HOM05D006925 ORTHO05D008830 3.0e-75 286.2 166 79.5
C07p33220 Brassica napus HOM05D006925 ORTHO05D008830 3.0e-75 286.2 166 79.5
BolC7t43833H Brassica oleracea HOM05D006925 ORTHO05D008830 3.0e-75 286.2 166 79.5
Sopen10g013620 Solanum pennellii HOM05D006925 ORTHO05D008830 3.0e-75 286.2 166 80.1
A06p43640 Brassica napus HOM05D006925 ORTHO05D008830 3.9e-75 285.8 166 79.5
BraA06t27246Z Brassica rapa HOM05D006925 ORTHO05D008830 3.9e-75 285.8 166 79.5
CAN.G402.4 Capsicum annuum HOM05D006925 ORTHO05D008830 5.1e-75 285.4 166 80.7
Actinidia00135 Actinidia chinensis HOM05D006925 ORTHO05D008830 6.7e-75 285.0 166 80.1
Aa31LG2G7670 Aethionema arabicum HOM05D006925 ORTHO05D008830 6.7e-75 285.0 169 78.1
PGSC0003DMG400003436 Solanum tuberosum HOM05D006925 ORTHO05D008830 6.7e-75 285.0 166 79.5
Solyc10g044840.2 Solanum lycopersicum HOM05D006925 ORTHO05D008830 8.8e-75 284.6 166 79.5
Prupe.1G587400 Prunus persica HOM05D006925 ORTHO05D008830 1.1e-74 284.3 166 80.7
Sp2g13680 Schrenkiella parvula HOM05D006925 ORTHO05D008830 2.0e-74 283.5 167 78.4
MD15G1445500 Malus domestica HOM05D006925 ORTHO05D008830 2.5e-74 283.1 166 80.7
Phvul.003G090400 Phaseolus vulgaris HOM05D006925 ORTHO05D008830 3.3e-74 282.7 167 79.0
VMungo1215G1006 Vigna mungo HOM05D006925 ORTHO05D008830 5.7e-74 282.0 167 78.4
Lj4g0023352 Lotus japonicus HOM05D006925 ORTHO05D008830 9.7e-74 281.2 170 82.4
arahy.Tifrunner.gnm1.ann1.EDE5FN Arachis hypogaea HOM05D006925 ORTHO05D008830 1.3e-73 280.8 167 80.2
Migut.B00701 Erythranthe guttata HOM05D006925 ORTHO05D008830 1.3e-73 280.8 168 77.4
Glyma.07G271000 Glycine max HOM05D006925 ORTHO05D008830 1.3e-73 280.8 168 78.0
Aqoxy5G01835 Aquilegia oxysepala HOM05D006925 ORTHO05D008830 4.8e-73 278.9 168 76.8
arahy.Tifrunner.gnm1.ann1.MTF64G Arachis hypogaea HOM05D006925 ORTHO05D008830 8.2e-73 278.1 167 79.6
Carub.0005s0146 Capsella rubella HOM05D006925 ORTHO05D008830 2.4e-72 276.6 156 81.4
Lalb_Chr07g0176851 Lupinus albus HOM05D006925 ORTHO05D008830 9.1e-72 274.6 168 75.0
PSO210G4845 Papaver somniferum HOM05D006925 ORTHO05D008830 2.0e-71 273.5 168 75.6
Ca_13518_v3 Cicer arietinum L. HOM05D006925 ORTHO05D008830 1.7e-70 270.4 169 79.9
AUR62040119 Chenopodium quinoa HOM05D006925 ORTHO05D008830 6.5e-70 268.5 196 67.9
Hund15314 Selenicereus undatus HOM05D006925 ORTHO05D008830 6.5e-70 268.5 166 78.9
HPP92_001204 Vanilla planifolia HOM05D006925 ORTHO05D008830 1.8e-67 260.4 167 73.1
EL10Ac6g13952 Beta vulgaris HOM05D006925 ORTHO05D008830 3.0e-67 259.6 219 59.4
Medtr4g134410 Medicago truncatula HOM05D006925 ORTHO05D008830 4.4e-66 255.8 173 74.0
Lj5A307T31 Lonicera japonica HOM05D006925 ORTHO05D008830 6.3e-65 251.9 165 72.7
TAR628G1169 Trochodendron aralioides HOM05D006925 ORTHO05D008830 2.4e-64 250.0 138 84.8
Nitab4.5_0000288g0050 Nicotiana tabacum HOM05D006925 ORTHO05D008830 1.7e-62 243.8 166 69.9
vmacro01630 Vaccinium macrocarpon HOM05D006925 ORTHO05D008830 3.6e-60 236.1 170 67.1
SGA_v2.0_scaffold254G45226 Striga asiatica HOM05D006925 ORTHO05D008830 4.7e-60 235.7 229 53.3
CARHR144990 Cardamine hirsuta HOM05D006925 ORTHO05D008830 9.7e-58 228.0 153 69.9
Zm00001eb064090 Zea mays HOM05D006925 ORTHO05D008830 1.7e-57 227.3 165 64.8
Mapoly0001s0380 Marchantia polymorpha HOM05D006925 ORTHO05D008830 2.2e-57 226.9 168 64.3
AT2G02410 Arabidopsis thaliana HOM05D006925 ORTHO05D008830 3.5e-55 219.5 167 64.7
Psat4g001760 Pisum sativum HOM05D006925 ORTHO05D008830 1.3e-54 217.6 167 64.1
TPR.G5931 Trifolium pratense HOM05D006925 ORTHO05D008830 2.9e-54 216.5 176 63.6
Pp3c15_4340 Physcomitrium patens HOM05D006925 ORTHO05D008830 8.5e-54 214.9 167 59.9
Pp3c9_8480 Physcomitrium patens HOM05D006925 ORTHO05D008830 3.0e-51 206.5 167 59.3
AagrBONN_evm.TU.Sc2ySwM_369.585 Anthoceros agrestis HOM05D006925 ORTHO05D008830 9.7e-50 201.4 194 54.6
SMO358G0233 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 1.1e-45 188.0 167 55.1
SEGI_06138 Sequoiadendron giganteum HOM05D006925 ORTHO05D008830 8.0e-44 181.8 159 59.1
Sabra03G0019900 Salix brachista HOM05D006925 ORTHO05D008830 2.8e-41 173.3 142 62.0
Ciclev10003645m.g Citrus clementina HOM05D006925 ORTHO05D008830 2.9e-38 163.3 104 74.0
Rhsim11G0114700 Rhododendron simsii HOM05D006925 ORTHO05D008830 1.0e-35 154.8 169 50.3
CBR_g49407 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-16 89.0 92 50.0
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 9.2e-16 88.6 69 55.1
SEGI_30664 Sequoiadendron giganteum HOM05D006925 ORTHO05D008830 3.5e-15 86.7 91 52.7
SMO201G0205 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 7.8e-15 85.5 68 52.9
CBR_g46374 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-12 76.3 48 70.8
Oeu016658.1 Olea europaea HOM05D006925 ORTHO05D008830 4.4e-10 69.7 42 71.4
Os03g0843200 Oryza sativa ssp. japonica HOM05D006925 ORTHO05D008830 1.4e-08 64.7 42 69.0
PRCOL_00002508 Prasinoderma coloniale HOM05D006925 ORTHO05D008830 7.1e-08 62.4 137 32.8
MCO01G431 Micromonas commoda HOM05D006925 ORTHO05D008830 2.1e-07 60.8 105 37.1
AL5G11650 Arabidopsis lyrata HOM05D006925 ORTHO05D008830 3.5e-07 60.1 29 89.7
TAR628G1563 Trochodendron aralioides HOM05D006925 ORTHO05D008830 1.3e-06 58.2 29 89.7


User provided reference genes

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