Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 8.6e-206 720.3 426 100.0
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.4e-192 676.4 426 94.8
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 6.7e-174 614.4 427 87.8
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 3.4e-170 602.1 426 81.2
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.9e-169 599.0 431 78.2
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 3.8e-169 598.6 428 83.2
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 4.2e-168 595.1 427 80.1
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 2.1e-167 592.8 427 77.8
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.1e-167 592.8 428 81.1
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 6.0e-167 591.3 429 80.0
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.0e-166 590.5 427 80.8
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.0e-166 590.5 428 80.8
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 1.0e-166 590.5 426 79.1
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.3e-166 590.1 428 80.8
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.8e-166 589.7 427 79.2
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 2.3e-166 589.3 428 83.2
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 1.5e-165 586.6 427 80.3
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.5e-165 586.6 431 81.2
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 5.7e-165 584.7 425 77.9
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 2.2e-164 582.8 428 74.5
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 2.8e-164 582.4 427 79.9
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.7e-164 582.0 428 74.8
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 2.4e-163 579.3 424 76.7
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 5.3e-163 578.2 426 78.9
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.2e-162 577.0 427 76.8
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 1.2e-162 577.0 427 79.9
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.5e-162 576.6 433 76.0
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 5.9e-162 574.7 433 76.9
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 5.9e-162 574.7 429 76.5
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 7.6e-162 574.3 427 79.4
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 1.3e-161 573.5 433 76.7
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 1.4e-160 570.1 426 77.2
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 7.2e-160 567.8 426 78.4
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 9.4e-160 567.4 433 76.4
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 9.4e-160 567.4 424 80.9
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.7e-159 565.8 432 76.2
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 7.9e-159 564.3 428 78.0
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 1.4e-158 563.5 422 72.0
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.0e-158 562.4 422 71.8
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 6.7e-158 561.2 422 75.8
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 8.8e-158 560.8 427 79.9
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 8.8e-158 560.8 427 77.8
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.5e-157 560.1 428 74.1
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.5e-157 560.1 428 77.3
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 7.4e-157 557.8 422 74.9
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 7.4e-157 557.8 428 71.3
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.3e-156 557.0 427 70.0
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 2.2e-156 556.2 423 78.5
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 4.1e-155 552.0 423 76.6
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 6.9e-155 551.2 431 76.3
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 1.2e-154 550.4 427 77.5
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 1.9e-152 543.1 427 72.8
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 2.1e-151 539.7 425 77.4
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 3.6e-151 538.9 424 78.5
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 2.3e-150 536.2 429 76.7
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 2.4e-147 526.2 431 71.2
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.6e-146 522.7 428 70.1
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 1.7e-145 520.0 424 70.0
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.4e-144 516.9 428 66.1
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 1.4e-144 516.9 428 70.6
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 2.5e-144 516.2 406 75.6
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 1.4e-142 510.4 424 66.3
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 3.0e-142 509.2 425 64.9
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.5e-141 506.9 414 72.0
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 2.6e-141 506.1 429 65.7
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 1.4e-139 500.4 415 71.3
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.6e-138 496.1 428 69.9
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.2e-137 493.0 427 66.0
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 2.9e-137 492.7 429 71.3
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 6.5e-137 491.5 426 70.4
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 8.5e-137 491.1 336 75.3
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.5e-136 490.3 336 74.7
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.5e-136 489.6 426 72.3
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.5e-136 488.4 430 71.4
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.2e-135 487.3 441 63.7
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.2e-135 487.3 439 68.6
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.6e-135 486.9 440 64.3
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 2.7e-135 486.1 428 66.1
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 5.2e-134 481.9 430 66.3
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 3.3e-133 479.2 404 65.1
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 3.3e-133 479.2 422 66.1
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 4.8e-132 475.3 335 73.7
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 4.8e-132 475.3 431 59.9
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 4.8e-132 475.3 396 72.5
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.4e-131 473.8 330 73.9
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 1.6e-130 470.3 337 74.8
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 1.6e-130 470.3 337 74.8
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 2.7e-130 469.5 337 74.5
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 2.2e-129 466.5 431 64.3
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 5.0e-129 465.3 444 63.5
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.2e-128 462.6 430 67.9
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 4.2e-128 462.2 433 65.6
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 5.5e-128 461.8 426 61.5
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 2.3e-126 456.4 408 65.2
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 2.0e-125 453.4 428 60.0
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 7.5e-125 451.4 430 57.9
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 9.8e-125 451.1 428 60.3
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 6.3e-124 448.4 451 63.0
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 2.4e-123 446.4 431 59.2
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.7e-121 440.3 427 59.3
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 2.5e-120 436.4 406 60.6
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 4.5e-114 415.6 405 60.0
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.1e-107 392.5 385 58.2
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 1.9e-104 383.6 227 85.9
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 5.6e-104 382.1 385 55.8
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 4.7e-103 379.0 453 57.4
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.2e-102 375.6 425 52.2
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 2.0e-101 373.6 292 70.5
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 4.9e-100 369.0 424 54.5
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.7e-97 360.5 319 62.1
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 5.2e-94 349.0 450 53.3
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.1e-86 324.7 295 61.7
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 6.8e-86 322.0 284 73.2
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 4.2e-83 312.8 276 60.5
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 4.0e-78 296.2 288 58.3
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 4.2e-75 286.2 166 88.0
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 6.0e-74 282.3 174 82.2
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 5.6e-72 275.8 349 47.3
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 2.8e-71 273.5 360 47.5
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 7.6e-69 265.4 250 58.0
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 6.9e-62 242.3 138 87.7
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 6.7e-57 225.7 164 69.5
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 5.7e-56 222.6 118 90.7
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 7.1e-51 205.7 173 61.8
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 9.7e-48 195.3 117 83.8
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 5.9e-45 186.0 124 75.8
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 2.9e-44 183.7 164 60.4
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 3.8e-44 183.3 286 45.1
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 8.2e-39 165.6 161 51.6
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 3.4e-37 160.2 258 39.5
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 6.5e-36 156.0 318 38.7
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 2.6e-29 134.0 158 56.3
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 9.4e-27 125.6 121 56.2
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 6.1e-26 122.9 79 75.9
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.3e-25 120.9 69 88.4
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.7e-25 119.4 69 87.0
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 6.7e-25 119.4 69 87.0
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 8.8e-25 119.0 97 63.9
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.3e-24 117.1 69 85.5
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 4.4e-24 116.7 170 44.1
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 7.4e-24 115.9 74 74.3
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.4e-22 111.7 66 80.3
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 1.8e-22 111.3 66 80.3
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 5.5e-19 99.8 141 48.2
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.7e-18 97.4 163 41.1
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 4.7e-18 96.7 113 49.6
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 1.8e-09 68.2 47 66.0
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 1.8e-09 68.2 47 66.0
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 6.3e-07 59.7 40 72.5


User provided reference genes

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