Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 1.6e-200 702.6 357 100.0
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 2.4e-193 678.7 357 97.2
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 7.8e-176 620.5 357 88.8
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.7e-151 539.7 356 76.1
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 1.9e-150 536.2 361 75.1
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 2.8e-149 532.3 356 75.8
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 6.2e-149 531.2 360 74.2
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 2.4e-148 529.3 361 73.7
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 3.1e-148 528.9 361 73.7
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.5e-147 526.6 356 75.0
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 2.6e-147 525.8 361 73.4
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.4e-147 525.4 361 74.0
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.4e-147 525.4 361 74.0
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 7.6e-147 524.2 357 74.8
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 1.3e-146 523.5 361 72.9
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 3.8e-146 521.9 361 74.0
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 4.9e-146 521.5 359 73.8
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 6.4e-146 521.2 359 74.1
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 6.4e-146 521.2 360 73.1
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 1.1e-145 520.4 361 72.9
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 1.9e-145 519.6 355 74.4
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 1.2e-144 516.9 362 71.0
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 2.1e-144 516.2 361 70.9
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 2.1e-144 516.2 361 70.6
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 6.0e-144 514.6 361 70.4
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 1.8e-143 513.1 361 72.0
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 2.3e-143 512.7 353 72.5
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 3.0e-143 512.3 353 72.0
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 3.9e-143 511.9 362 72.4
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 5.1e-143 511.5 356 71.6
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 5.1e-143 511.5 353 72.2
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 8.7e-143 510.8 361 73.1
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.9e-142 509.6 364 71.4
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 4.3e-142 508.4 358 70.9
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 5.6e-142 508.1 359 70.8
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 1.3e-141 506.9 361 71.7
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 1.3e-141 506.9 359 73.8
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 2.1e-141 506.1 353 72.0
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 4.8e-141 505.0 359 73.8
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.4e-140 503.4 353 71.4
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 1.8e-140 503.1 353 71.1
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 6.9e-140 501.1 353 71.1
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 6.9e-140 501.1 359 72.7
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.5e-139 500.0 361 70.9
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 1.5e-139 500.0 361 70.9
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 2.6e-139 499.2 355 73.0
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 5.8e-139 498.0 386 67.6
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.0e-138 497.3 356 70.5
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 1.3e-138 496.9 353 70.0
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 1.7e-138 496.5 358 70.9
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 1.4e-137 493.4 353 69.7
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 2.5e-137 492.7 359 71.3
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 5.5e-137 491.5 357 72.3
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 7.1e-137 491.1 353 70.3
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 9.3e-137 490.7 356 69.7
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 9.3e-137 490.7 357 69.5
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 2.7e-136 489.2 359 71.3
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 3.5e-136 488.8 361 68.4
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 7.9e-136 487.6 353 69.7
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 7.9e-136 487.6 358 72.1
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 1.0e-135 487.3 357 72.3
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.5e-134 482.6 360 67.5
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 4.8e-133 478.4 360 66.4
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 8.2e-133 477.6 359 66.9
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 8.2e-133 477.6 357 67.8
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.4e-132 476.9 357 67.5
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 2.4e-132 476.1 313 76.4
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 4.1e-132 475.3 355 71.8
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 2.6e-131 472.6 388 62.1
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 4.5e-131 471.9 357 66.7
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 5.9e-131 471.5 361 68.1
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.5e-129 466.1 364 67.0
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 2.1e-128 463.0 357 66.9
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 7.9e-128 461.1 356 63.8
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 1.5e-126 456.8 357 65.3
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.1e-124 450.7 357 65.8
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 1.2e-123 447.2 352 65.9
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 5.9e-123 444.9 358 62.0
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 2.9e-122 442.6 359 64.1
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 7.2e-121 438.0 357 64.4
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 9.4e-121 437.6 376 62.0
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 1.2e-120 437.2 353 67.4
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 6.1e-120 434.9 380 61.1
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 2.0e-118 429.9 473 53.1
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 6.3e-117 424.9 359 59.9
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 2.4e-116 422.9 356 59.8
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 5.0e-114 415.2 359 60.4
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 1.9e-113 413.3 359 59.6
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 5.0e-106 388.7 359 59.3
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 7.0e-100 368.2 197 93.9
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 7.2e-97 358.2 257 70.0
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 9.4e-97 357.8 357 51.0
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 1.6e-96 357.1 358 55.0
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 2.7e-96 356.3 257 70.0
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.2e-94 350.9 252 69.4
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.8e-92 343.6 251 68.5
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 5.9e-91 338.6 352 48.3
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.3e-90 337.4 386 48.2
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 1.1e-89 334.3 294 60.9
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.5e-86 323.9 356 46.6
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.1e-84 317.8 340 48.2
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.8e-84 317.0 356 50.3
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 7.8e-83 311.6 365 48.2
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.8e-76 290.4 340 46.2
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 2.0e-75 287.0 205 65.9
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.6e-67 260.8 347 39.8
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.1e-65 254.6 359 40.7
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 9.5e-65 251.5 353 41.1
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.2e-52 209.9 157 70.1
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 6.4e-45 185.7 149 65.1
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 4.0e-39 166.4 187 52.4
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 7.9e-35 152.1 99 76.8
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.9e-33 147.5 104 67.3
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 2.5e-33 147.1 149 57.7
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 4.8e-32 142.9 402 29.6
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.4e-31 141.4 98 71.4
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.8e-31 141.0 84 79.8
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 8.4e-29 132.1 359 30.4
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 4.2e-28 129.8 93 72.0
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 8.7e-26 122.1 128 50.8
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 2.8e-24 117.1 77 70.1
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 4.8e-24 116.3 129 52.7
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.2e-21 107.5 88 63.6
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.5e-21 105.9 88 62.5
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 3.5e-19 100.1 96 56.2
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 1.3e-18 98.2 95 53.7
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 1.3e-18 98.2 95 53.7
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.7e-16 90.1 97 53.6
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 1.3e-13 81.6 51 72.5
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 1.3e-13 81.6 130 42.3
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 3.0e-10 70.5 69 58.0


User provided reference genes

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