Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.3e-123 446.8 298 100.0
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 5.8e-108 394.8 255 94.5
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 2.5e-103 379.4 256 94.1
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 9.3e-90 334.3 250 80.0
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 1.0e-88 330.9 252 80.2
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.9e-67 259.6 236 69.5
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 3.8e-67 259.2 237 74.3
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 2.5e-66 256.5 237 68.8
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 6.1e-65 251.9 235 66.4
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 7.9e-65 251.5 237 66.2
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.0e-64 251.1 236 65.7
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.8e-64 250.4 236 65.7
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 5.2e-64 248.8 237 65.8
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 8.8e-64 248.1 244 63.5
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 1.1e-63 247.7 239 72.0
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 1.3e-62 244.2 237 66.2
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.1e-61 241.1 234 65.0
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 3.1e-61 239.6 236 65.7
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 7.0e-61 238.4 248 65.7
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 2.0e-60 236.9 234 70.1
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.5e-60 235.7 236 64.8
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 2.2e-59 233.4 247 62.8
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 2.2e-59 233.4 234 66.2
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 2.9e-59 233.0 241 64.3
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 5.0e-59 232.3 239 60.3
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 5.0e-59 232.3 234 61.1
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 6.5e-59 231.9 234 56.8
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 1.5e-58 230.7 239 62.3
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 4.2e-58 229.2 256 64.1
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 4.2e-58 229.2 237 59.1
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 9.4e-58 228.0 237 59.5
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 1.2e-57 227.6 234 57.7
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.2e-57 227.6 247 66.0
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 1.6e-57 227.3 241 61.0
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 4.7e-57 225.7 267 57.7
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 6.1e-57 225.3 247 65.6
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 6.1e-57 225.3 237 62.4
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 1.0e-56 224.6 263 59.7
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.0e-56 224.6 254 59.8
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.0e-56 224.6 232 60.8
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.4e-56 224.2 231 60.2
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.4e-56 224.2 244 66.0
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 1.4e-56 224.2 256 63.3
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 1.8e-56 223.8 257 64.6
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.8e-56 223.8 234 63.7
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 1.8e-56 223.8 236 63.6
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 8.8e-56 221.5 234 62.4
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 5.7e-55 218.8 238 62.6
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 5.7e-55 218.8 259 59.5
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 9.7e-55 218.0 252 56.3
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 1.3e-54 217.6 231 63.6
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 3.7e-54 216.1 231 64.1
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.8e-54 215.7 219 66.2
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 4.8e-54 215.7 226 59.7
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 8.2e-54 214.9 237 56.5
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 1.1e-53 214.5 251 56.6
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.6e-52 210.7 252 55.6
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.5e-52 209.5 235 54.0
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.7e-51 207.2 246 55.3
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.7e-51 207.2 254 53.1
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.9e-51 206.5 240 55.8
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 3.8e-51 206.1 256 61.7
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 5.0e-51 205.7 240 55.0
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 6.5e-51 205.3 240 54.6
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 6.5e-51 205.3 240 54.6
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.5e-50 203.4 237 59.1
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 3.2e-50 203.0 258 53.1
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 5.5e-50 202.2 244 59.4
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 1.2e-49 201.1 238 60.5
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 2.7e-49 199.9 241 53.1
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 1.4e-48 197.6 279 51.3
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 6.8e-48 195.3 270 59.6
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 8.8e-48 194.9 242 57.0
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 1.7e-46 190.7 248 52.8
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.1e-45 188.0 261 53.6
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 2.4e-45 186.8 248 56.9
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 5.4e-45 185.7 172 70.9
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.2e-44 184.5 265 55.8
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 3.5e-44 183.0 254 52.0
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 5.9e-44 182.2 268 48.9
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 2.2e-43 180.3 234 60.7
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 2.2e-43 180.3 201 60.7
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 8.5e-43 178.3 252 50.0
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 7.2e-42 175.3 242 56.6
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 7.2e-42 175.3 244 57.8
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 1.6e-41 174.1 237 55.7
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.1e-41 173.7 228 61.8
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 4.7e-41 172.6 244 54.5
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 6.1e-41 172.2 237 57.0
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 2.3e-40 170.2 244 54.5
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 3.0e-40 169.9 253 55.7
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 6.8e-40 168.7 236 51.7
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 1.5e-39 167.5 259 51.7
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 3.4e-39 166.4 240 54.2
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 7.5e-39 165.2 239 53.6
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 9.8e-39 164.9 240 56.2
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 9.8e-39 164.9 240 56.2
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 2.8e-38 163.3 204 61.3
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 2.8e-38 163.3 173 54.3
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 3.7e-38 162.9 247 55.5
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 6.3e-38 162.2 245 48.2
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.8e-37 160.6 208 57.7
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 9.2e-37 158.3 244 50.0
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 1.6e-36 157.5 236 45.3
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.7e-36 156.8 246 54.9
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 1.3e-35 154.5 254 44.9
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 6.6e-35 152.1 234 42.3
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 3.3e-34 149.8 232 47.0
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 8.0e-33 145.2 245 46.5
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 1.4e-32 144.4 247 46.2
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.4e-32 144.4 238 48.3
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 3.0e-32 143.3 178 52.8
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 8.9e-32 141.7 253 49.4
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 1.2e-31 141.4 248 46.8
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.5e-31 141.0 153 53.6
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 7.5e-31 138.7 248 46.4
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 3.7e-30 136.3 245 51.0
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 8.3e-30 135.2 264 38.3
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 1.4e-29 134.4 201 59.7
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 1.4e-29 134.4 249 50.2
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 1.4e-29 134.4 249 50.2
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.8e-29 134.0 237 47.7
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 1.8e-29 134.0 251 49.8
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 1.8e-29 134.0 251 49.8
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 2.4e-29 133.7 262 47.3
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 4.1e-29 132.9 238 47.1
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.2e-28 131.3 241 45.6
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 2.7e-28 130.2 240 51.2
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 3.5e-28 129.8 260 44.6
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 5.2e-24 115.9 250 47.2
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.0e-23 114.0 269 41.6
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 2.6e-23 113.6 258 42.2
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 7.5e-23 112.1 166 45.8
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 2.4e-21 107.1 163 42.9
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 7.0e-21 105.5 238 36.6
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 9.2e-21 105.1 242 45.5
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 9.2e-21 105.1 240 35.0
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 7.8e-20 102.1 162 42.0
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 6.2e-17 92.4 107 47.7
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.4e-15 86.3 155 37.4
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 1.1e-13 81.6 44 86.4
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 2.4e-13 80.5 153 36.6
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.1e-10 71.6 141 36.9
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 1.8e-08 64.3 149 34.9
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 4.0e-08 63.2 146 35.6
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 5.2e-08 62.8 146 33.6
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 5.2e-08 62.8 147 34.7
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 6.8e-08 62.4 158 31.0
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 6.8e-08 62.4 149 36.9
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 8.9e-08 62.0 141 36.2
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 8.9e-08 62.0 149 33.6
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 2.6e-07 60.5 149 33.6
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 3.4e-07 60.1 146 34.2
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 4.4e-07 59.7 144 34.7
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 5.8e-07 59.3 146 34.2
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 9.9e-07 58.5 146 34.2
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 1.7e-06 57.8 146 36.3
Thecc.01G054400 Theobroma cacao HOM05D002458 ORTHO05D002603 1.7e-06 57.8 146 33.6
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 2.9e-06 57.0 147 32.7
CSS0037574 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 3.8e-06 56.6 146 34.9
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 4.9e-06 56.2 152 34.9
MSTRG.23756 Avicennia marina HOM05D002458 ORTHO05D002603 4.9e-06 56.2 152 32.9
MSTRG.7055 Avicennia marina HOM05D003370 ORTHO05D003848 4.9e-06 56.2 150 35.3
Dinv29979 Davidia involucrata HOM05D002458 ORTHO05D002603 4.9e-06 56.2 150 36.0
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 4.9e-06 56.2 150 34.0
CDE04G3581 Ceratophyllum demersum HOM05D002458 ORTHO05D002603 6.4e-06 55.8 148 33.8
Haze_15416 Corylus avellana HOM05D002458 ORTHO05D002603 6.4e-06 55.8 147 33.3
Peaxi162Scf00232g01110 Petunia axillaris HOM05D003370 ORTHO05D003848 6.4e-06 55.8 154 29.9
COL.COLO4_11399 Corchorus olitorius HOM05D002458 ORTHO05D002603 8.4e-06 55.5 148 32.4
CsaV3_2G016870 Cucumis sativus L. HOM05D002458 ORTHO05D002603 8.4e-06 55.5 150 33.3
PGSC0003DMG400015780 Solanum tuberosum HOM05D002458 ORTHO05D002603 8.4e-06 55.5 146 34.2


User provided reference genes

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