Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 6.9e-240 833.6 420 100.0
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 2.5e-226 788.5 420 94.3
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 6.1e-204 714.1 420 86.0
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.0e-142 510.8 483 58.8
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 2.1e-119 433.3 423 55.3
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.5e-117 427.2 421 53.9
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 2.2e-116 423.3 423 54.8
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 7.9e-111 404.8 424 50.9
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.5e-109 400.6 434 51.6
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 6.3e-108 395.2 424 51.4
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 2.9e-105 386.3 423 50.4
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 4.2e-104 382.5 422 49.5
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.6e-103 380.6 424 49.5
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 1.8e-102 377.1 421 50.6
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 2.0e-101 373.6 428 49.5
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 3.3e-101 372.9 441 48.3
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 7.4e-101 371.7 422 49.1
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 6.3e-100 368.6 420 49.5
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 8.2e-100 368.2 420 49.5
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.8e-99 367.1 423 49.6
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.4e-99 366.7 420 49.5
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.2e-98 364.4 423 46.8
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.5e-98 364.0 417 48.7
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.6e-98 363.2 426 47.2
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 3.4e-98 362.8 428 47.0
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.9e-96 357.1 425 47.5
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.9e-96 357.1 421 46.3
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.5e-96 356.7 420 48.6
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 4.7e-95 352.4 434 45.9
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.7e-95 352.4 419 47.5
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 6.1e-95 352.1 426 46.5
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.3e-94 350.1 419 47.3
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 4.4e-93 345.9 431 45.0
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 7.4e-93 345.1 429 47.8
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.8e-92 342.4 429 46.2
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 6.3e-92 342.0 442 45.5
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 5.3e-91 339.0 429 45.9
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.2e-90 337.8 425 46.1
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 2.6e-90 336.7 433 43.9
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.5e-90 335.9 427 46.1
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.9e-88 330.5 422 44.8
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.5e-88 330.1 435 42.1
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.6e-87 327.4 423 45.2
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.0e-86 324.7 398 46.0
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 2.3e-86 323.6 444 43.2
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 4.0e-86 322.8 369 48.8
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.3e-84 317.8 424 45.0
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 6.3e-84 315.5 428 45.6
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 5.3e-83 312.4 349 50.1
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 7.7e-82 308.5 335 51.6
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.5e-80 304.3 422 44.8
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 3.2e-80 303.1 424 45.0
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 1.6e-79 300.8 452 40.5
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 2.1e-79 300.4 423 44.7
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 8.0e-79 298.5 426 44.6
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 6.8e-78 295.4 434 42.6
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 8.8e-78 295.0 422 44.5
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.2e-77 294.7 306 51.3
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 3.4e-77 293.1 426 42.7
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.1e-75 288.1 421 41.3
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.8e-75 287.3 421 40.6
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 1.8e-75 287.3 422 43.1
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 2.4e-75 287.0 417 42.4
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 4.1e-75 286.2 438 39.5
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 5.4e-75 285.8 396 43.9
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.6e-74 284.3 439 40.1
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 2.3e-73 280.4 427 41.5
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 2.9e-73 280.0 421 41.3
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.5e-72 276.9 425 40.5
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.5e-72 276.9 425 40.5
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 3.3e-72 276.6 428 40.4
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 3.3e-72 276.6 425 41.4
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.6e-71 274.2 434 41.0
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.6e-71 274.2 423 41.6
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.8e-71 273.5 423 40.7
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.6e-71 273.1 438 38.1
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 4.7e-71 272.7 428 40.7
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 4.0e-70 269.6 439 42.1
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 4.0e-70 269.6 399 43.4
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 6.8e-70 268.9 425 41.6
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.5e-69 267.7 435 39.3
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 4.4e-69 266.2 426 39.4
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 4.4e-69 266.2 427 41.9
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 5.7e-69 265.8 451 38.1
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 7.5e-69 265.4 438 38.6
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 7.5e-69 265.4 422 38.6
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.1e-67 261.5 442 38.0
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.1e-67 261.5 433 40.4
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 1.1e-67 261.5 349 42.4
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.0e-66 257.3 268 52.2
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 2.0e-66 257.3 446 38.1
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 2.0e-66 257.3 446 38.8
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.5e-66 256.5 426 38.7
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 5.9e-66 255.8 438 36.1
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.7e-65 254.2 436 37.2
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 3.8e-65 253.1 438 35.8
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 6.6e-65 252.3 426 36.4
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 8.6e-65 251.9 436 36.0
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.9e-64 250.8 450 36.4
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.3e-64 250.0 268 50.7
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 3.3e-64 250.0 430 37.2
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.6e-63 247.7 425 37.2
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 8.0e-63 245.4 423 35.0
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 5.2e-62 242.7 426 34.0
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 1.5e-61 241.1 426 33.8
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 4.9e-60 236.1 425 33.9
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 3.2e-59 233.4 262 49.6
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 7.0e-59 232.3 426 35.2
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 9.2e-59 231.9 414 40.3
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 6.0e-58 229.2 423 33.1
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 7.8e-58 228.8 426 34.0
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.7e-57 227.6 426 34.7
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.1e-56 224.9 413 38.7
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.9e-56 224.2 428 36.2
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 5.6e-56 222.6 423 34.3
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 5.6e-56 222.6 426 34.0
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 1.1e-54 218.4 433 35.8
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 8.3e-52 208.8 415 32.8
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.2e-50 204.9 427 33.0
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 6.0e-50 202.6 340 40.9
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 5.1e-49 199.5 207 49.8
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.1e-47 194.1 419 33.2
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 8.1e-47 192.2 419 31.3
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.1e-46 191.8 363 32.2
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.9e-43 181.0 426 31.2
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 5.4e-43 179.5 350 34.3
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 9.2e-43 178.7 295 39.7
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 6.0e-42 176.0 431 30.4
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 3.1e-38 163.7 371 33.4
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 3.8e-36 156.8 259 34.4
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.6e-31 141.4 168 45.2
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-30 138.7 225 39.1
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.1e-27 128.6 174 40.8
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-27 128.3 213 36.6
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 3.2e-27 127.1 389 27.5
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.1e-24 118.6 152 45.4
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 2.5e-24 117.5 152 44.7
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 5.6e-24 116.3 145 46.2
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 7.3e-24 115.9 152 44.1
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 7.3e-24 115.9 152 44.1
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.8e-20 103.6 128 46.1
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 4.2e-19 100.1 87 59.8
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 3.3e-16 90.5 169 32.5
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 1.3e-12 78.6 252 26.6
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 7.4e-08 62.8 60 56.7
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 2.1e-07 61.2 126 37.3
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 8.2e-07 59.3 71 40.8
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.1e-06 58.9 57 50.9
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.1e-06 58.9 57 50.9
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 1.1e-06 58.9 226 25.2
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 2.4e-06 57.8 62 41.9
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 4.0e-06 57.0 81 34.6


User provided reference genes

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