Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 1.8e-105 386.0 196 100.0
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 1.5e-99 366.3 196 95.4
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 9.2e-86 320.5 198 84.3
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 1.6e-61 240.0 166 71.1
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 1.5e-59 233.4 196 67.9
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 4.3e-59 231.9 182 68.1
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 3.4e-56 222.2 226 55.8
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 2.9e-55 219.2 171 69.6
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 3.8e-55 218.8 214 59.8
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 8.4e-55 217.6 213 62.0
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 1.1e-54 217.2 162 69.8
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 1.9e-54 216.5 164 70.7
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 2.4e-54 216.1 154 72.7
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 3.2e-54 215.7 168 69.0
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 4.2e-54 215.3 188 62.2
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 4.2e-54 215.3 188 62.2
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 9.2e-54 214.2 214 57.5
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 1.6e-53 213.4 160 68.8
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 2.7e-53 212.6 187 62.0
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 2.7e-53 212.6 196 60.2
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 6.0e-53 211.5 201 59.7
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 3.9e-52 208.8 212 56.6
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 3.9e-52 208.8 167 66.5
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 8.7e-52 207.6 195 61.0
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 8.7e-52 207.6 153 68.0
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 1.5e-51 206.8 205 58.0
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 2.5e-51 206.1 195 61.5
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 4.3e-51 205.3 161 66.5
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 5.6e-51 204.9 169 61.5
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 2.1e-50 203.0 170 65.3
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 2.8e-50 202.6 171 64.9
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 6.2e-50 201.4 163 64.4
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 2.4e-49 199.5 196 57.7
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.1e-49 199.1 198 58.6
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 3.1e-49 199.1 195 58.5
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 3.1e-49 199.1 211 54.0
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 3.1e-49 199.1 174 63.2
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 5.3e-49 198.4 211 53.6
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 2.0e-48 196.4 179 63.1
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 2.0e-48 196.4 172 59.9
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 2.6e-48 196.1 186 60.8
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 3.4e-48 195.7 164 65.2
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 4.4e-48 195.3 193 54.4
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 7.6e-48 194.5 204 54.9
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 7.6e-48 194.5 168 62.5
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 9.9e-48 194.1 174 58.6
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 4.9e-47 191.8 201 54.2
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 4.9e-47 191.8 210 54.8
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 6.4e-47 191.4 172 59.3
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 1.4e-46 190.3 176 59.7
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 3.2e-46 189.1 172 58.7
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 1.2e-45 187.2 174 59.2
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 1.6e-45 186.8 164 61.0
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 2.7e-45 186.0 205 55.1
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 4.6e-45 185.3 229 49.3
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 4.6e-45 185.3 162 61.1
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 7.8e-45 184.5 202 53.5
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 1.3e-44 183.7 165 61.8
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.7e-44 183.3 168 61.3
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 3.0e-44 182.6 164 62.2
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 6.6e-44 181.4 178 56.7
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 1.5e-43 180.3 173 59.5
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 1.5e-43 180.3 173 59.5
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 1.5e-43 180.3 170 55.9
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 1.9e-43 179.9 140 68.6
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 1.9e-43 179.9 172 58.7
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 2.5e-43 179.5 173 60.7
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 2.5e-43 179.5 173 60.7
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 2.5e-43 179.5 152 65.8
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 2.5e-43 179.5 212 50.5
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 2.5e-43 179.5 178 58.4
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 3.3e-43 179.1 161 59.0
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 5.6e-43 178.3 212 50.9
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 5.6e-43 178.3 164 58.5
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 7.3e-43 177.9 187 53.5
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 9.6e-43 177.6 173 60.1
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 9.6e-43 177.6 209 51.2
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 2.1e-42 176.4 179 55.9
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 2.8e-42 176.0 165 59.4
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 1.8e-41 173.3 154 64.3
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 3.1e-41 172.6 200 52.5
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 4.0e-41 172.2 150 60.7
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 4.0e-41 172.2 165 57.0
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 5.3e-41 171.8 214 49.1
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 5.3e-41 171.8 168 55.4
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 6.9e-41 171.4 143 65.0
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 1.2e-40 170.6 154 61.7
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 1.2e-40 170.6 184 50.5
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.0e-40 169.9 148 60.1
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 2.6e-40 169.5 162 56.2
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 3.4e-40 169.1 197 51.8
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 1.7e-39 166.8 214 50.0
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 1.9e-38 163.3 109 73.4
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 4.2e-38 162.2 177 54.8
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 4.2e-38 162.2 118 69.5
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 1.2e-37 160.6 124 65.3
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 1.6e-37 160.2 171 53.8
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 6.0e-37 158.3 169 53.3
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 7.9e-37 157.9 144 61.8
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 1.3e-36 157.1 216 43.5
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 2.3e-36 156.4 106 67.0
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 2.3e-36 156.4 158 51.3
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 4.3e-35 152.1 185 51.9
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 2.1e-34 149.8 106 69.8
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 3.1e-33 146.0 87 75.9
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 6.4e-31 138.3 135 57.8
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 1.4e-30 137.1 156 53.2
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 6.7e-28 128.3 125 54.4
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 1.1e-25 120.9 167 48.5
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 1.0e-23 114.4 101 52.5
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 8.4e-23 111.3 116 50.0
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 1.2e-21 107.5 110 48.2
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 6.9e-17 91.7 161 42.2
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 5.9e-16 88.6 143 41.3
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.1e-14 84.3 107 48.6
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 4.2e-14 82.4 72 51.4
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 4.5e-08 62.4 42 73.8
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 9.4e-06 54.7 38 68.4


User provided reference genes

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