Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 7.1e-189 663.7 314 100.0
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 3.3e-186 654.8 318 98.1
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 2.5e-178 628.6 318 94.0
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 1.1e-168 596.7 322 89.4
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 2.2e-150 535.8 318 79.2
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 2.2e-150 535.8 318 78.0
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.9e-150 535.4 319 78.7
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 3.2e-149 531.9 317 78.9
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 5.5e-149 531.2 317 78.5
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.8e-147 526.2 320 77.5
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.8e-147 526.2 316 76.3
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 2.3e-147 525.8 319 78.1
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 3.0e-147 525.4 324 78.4
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 5.1e-147 524.6 317 77.6
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 6.7e-147 524.2 317 78.5
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 6.7e-147 524.2 321 78.2
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 2.5e-146 522.3 315 78.7
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 3.3e-146 521.9 316 76.6
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 4.3e-146 521.5 319 76.5
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 7.4e-146 520.8 318 77.0
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 9.7e-146 520.4 320 76.9
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.8e-145 518.8 320 76.6
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 4.8e-145 518.1 319 76.8
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 6.3e-145 517.7 319 76.8
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 1.1e-144 516.9 372 69.6
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.1e-144 516.9 318 75.5
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 1.8e-144 516.2 324 78.1
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 3.1e-144 515.4 319 75.9
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 9.0e-144 513.8 304 80.9
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 1.0e-142 510.4 319 75.2
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.7e-142 509.6 321 75.7
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 2.2e-142 509.2 319 74.9
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 2.9e-142 508.8 318 75.2
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 3.8e-142 508.4 318 76.4
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 6.5e-142 507.7 316 75.9
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 6.5e-142 507.7 341 71.8
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.4e-141 506.5 318 74.8
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 2.5e-141 505.8 316 74.4
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 9.4e-141 503.8 316 71.5
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.1e-140 502.7 316 75.3
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 4.6e-140 501.5 316 74.4
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 1.0e-139 500.4 368 65.5
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.4e-139 500.0 317 74.8
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 3.9e-139 498.4 316 73.7
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 3.9e-139 498.4 317 74.1
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 6.7e-139 497.7 321 73.2
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 3.3e-138 495.4 317 74.4
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.3e-138 495.4 314 74.2
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 9.7e-138 493.8 316 74.4
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.3e-137 493.4 318 73.0
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.3e-137 493.4 316 73.4
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.7e-137 493.0 317 72.2
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.2e-137 492.7 314 73.9
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 3.7e-137 491.9 317 74.4
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 8.2e-137 490.7 317 72.6
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 8.2e-137 490.7 317 71.9
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 1.1e-136 490.3 317 73.2
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 1.1e-136 490.3 316 72.8
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.4e-136 489.2 318 70.4
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 4.1e-136 488.4 316 72.8
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.1e-136 488.4 317 71.6
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 4.1e-136 488.4 317 72.2
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.2e-135 486.9 318 72.0
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.5e-135 486.5 317 73.2
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.5e-135 486.5 317 72.6
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 2.0e-135 486.1 320 72.8
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 3.4e-135 485.3 317 72.9
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 4.5e-135 485.0 317 73.2
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 4.5e-135 485.0 317 72.9
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 4.5e-135 485.0 317 72.9
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.0e-134 483.8 332 68.7
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 1.0e-134 483.8 317 73.2
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.0e-134 483.8 321 70.1
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 3.8e-134 481.9 317 72.9
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 6.5e-134 481.1 320 70.0
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 6.5e-134 481.1 318 71.7
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 8.5e-134 480.7 317 72.2
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.1e-133 480.3 316 70.3
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 1.4e-133 479.9 318 69.8
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 1.4e-133 479.9 320 71.9
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 1.9e-133 479.6 313 73.8
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.9e-133 479.6 317 72.2
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 2.5e-133 479.2 317 71.9
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 4.2e-133 478.4 316 69.9
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 4.2e-133 478.4 316 69.6
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 5.5e-133 478.0 317 69.1
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.2e-133 477.6 314 70.7
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.2e-132 476.9 316 70.3
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.2e-132 476.9 317 71.6
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 2.1e-132 476.1 316 70.6
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 6.1e-132 474.6 318 69.8
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 6.1e-132 474.6 317 71.3
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 7.9e-132 474.2 317 71.6
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.8e-131 473.0 323 68.1
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 8.8e-131 470.7 316 68.0
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 8.8e-131 470.7 316 68.0
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 5.7e-130 468.0 319 70.8
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.7e-129 466.5 316 70.6
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 2.2e-129 466.1 316 69.0
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 8.2e-129 464.2 314 68.5
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 8.2e-129 464.2 321 71.3
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 1.8e-128 463.0 316 69.3
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 9.1e-128 460.7 318 69.5
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 9.1e-128 460.7 316 68.0
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 1.5e-127 459.9 316 68.4
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 2.0e-127 459.5 390 58.7
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 2.2e-126 456.1 308 69.2
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 2.9e-126 455.7 318 70.8
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.5e-125 453.4 319 67.4
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.5e-125 452.6 312 69.9
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 5.5e-125 451.4 318 67.0
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 9.4e-125 450.7 318 67.3
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.1e-124 449.5 325 66.8
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 2.7e-124 449.1 322 67.4
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.4e-123 446.8 312 67.6
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.3e-123 446.0 315 68.9
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 4.4e-122 441.8 312 66.3
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.1e-120 437.2 293 66.6
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 4.5e-119 431.8 337 62.6
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 4.2e-117 425.2 318 66.0
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 9.4e-117 424.1 268 73.9
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 4.7e-116 421.8 325 63.1
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.4e-115 420.2 286 70.3
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.6e-114 416.0 290 69.0
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.3e-113 411.4 316 61.4
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 3.5e-111 405.6 334 59.9
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 3.8e-110 402.1 337 57.6
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 6.5e-110 401.4 280 69.6
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 6.8e-107 391.3 322 62.1
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 9.8e-106 387.5 303 65.7
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 6.3e-105 384.8 320 60.0
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.2e-103 380.6 322 56.8
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 4.5e-103 378.6 317 56.5
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.1e-100 369.8 314 57.0
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 6.8e-99 364.8 318 56.9
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 5.4e-96 355.1 293 59.7
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 2.0e-95 353.2 226 74.8
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 8.6e-94 347.8 244 67.6
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.1e-85 320.9 354 46.0
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 1.7e-81 307.0 180 80.0
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.2e-81 306.6 199 72.4
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 1.6e-79 300.4 214 64.5
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 4.3e-77 292.4 179 74.9
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 1.6e-68 263.8 184 69.6
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 6.2e-68 261.9 165 75.2
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.1e-67 261.2 302 51.3
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 1.2e-63 247.7 151 77.5
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.6e-60 237.3 144 76.4
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.8e-51 207.2 137 69.3
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.5e-45 187.6 147 59.2
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 1.8e-43 180.6 128 66.4
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 9.6e-37 158.3 111 67.6
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 4.1e-35 152.9 96 69.8
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 2.2e-33 147.1 93 74.2
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.9e-32 144.1 105 69.5
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 3.2e-32 143.3 125 57.6
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 3.0e-30 136.7 94 69.1
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.1e-29 134.8 69 84.1
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.6e-28 131.0 75 74.7
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 2.5e-24 117.1 67 74.6
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 9.4e-24 115.2 86 59.3
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 1.8e-22 110.9 74 68.9
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 6.3e-20 102.4 72 69.4
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 1.0e-17 95.1 110 44.5
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.1e-15 87.4 57 63.2
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 3.7e-12 76.6 42 81.0
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.5e-10 70.1 51 62.7
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.3e-09 68.2 56 62.5
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 6.5e-09 65.9 80 52.5
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 1.0e-06 58.5 84 40.5
PGR102G2199 Punica granatum HOM05D004085 ORTHO05D000487 2.3e-06 57.4 54 53.7
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 3.0e-06 57.0 42 69.0


User provided reference genes

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