Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 5.0e-45 184.1 96 100.0
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 3.1e-34 148.3 96 84.4
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.1e-31 139.8 97 76.3
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 2.9e-16 88.6 70 67.1
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 1.2e-14 83.2 80 58.8
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 4.6e-14 81.3 72 65.3
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 6.0e-14 80.9 70 62.9
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 6.0e-14 80.9 74 63.5
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 6.0e-14 80.9 74 63.5
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 6.0e-14 80.9 92 53.3
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 1.3e-13 79.7 96 50.0
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 2.3e-13 79.0 65 63.1
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 8.6e-13 77.0 80 51.2
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.1e-12 76.6 72 59.7
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 1.5e-12 76.3 70 58.6
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 1.5e-12 76.3 94 46.8
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 1.9e-12 75.9 65 58.5
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 2.5e-12 75.5 69 56.5
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 4.3e-12 74.7 64 60.9
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 7.3e-12 73.9 74 54.1
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 7.3e-12 73.9 64 60.9
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 7.3e-12 73.9 65 61.5
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 9.6e-12 73.6 93 44.1
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 1.2e-11 73.2 72 52.8
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 1.2e-11 73.2 93 46.2
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 1.6e-11 72.8 72 55.6
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 1.6e-11 72.8 69 56.5
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 2.1e-11 72.4 74 54.1
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 2.1e-11 72.4 82 51.2
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 2.8e-11 72.0 74 54.1
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 2.8e-11 72.0 63 61.9
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 2.8e-11 72.0 63 60.3
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 3.6e-11 71.6 74 52.7
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 4.7e-11 71.2 71 52.1
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 4.7e-11 71.2 65 56.9
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 4.7e-11 71.2 66 56.1
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 8.1e-11 70.5 93 46.2
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 8.1e-11 70.5 92 44.6
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 1.1e-10 70.1 65 56.9
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 1.4e-10 69.7 63 58.7
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 1.4e-10 69.7 66 56.1
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 1.4e-10 69.7 73 52.1
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 1.8e-10 69.3 65 55.4
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 1.8e-10 69.3 65 55.4
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 1.8e-10 69.3 68 50.0
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 2.4e-10 68.9 74 51.4
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 2.4e-10 68.9 92 50.0
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 3.1e-10 68.6 65 55.4
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 3.1e-10 68.6 87 48.3
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.1e-10 68.6 109 44.0
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.1e-10 68.6 109 44.0
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 4.0e-10 68.2 65 53.8
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 4.0e-10 68.2 63 55.6
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 4.0e-10 68.2 69 53.6
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 4.0e-10 68.2 92 42.4
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 4.0e-10 68.2 93 46.2
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 5.2e-10 67.8 93 43.0
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 8.9e-10 67.0 74 52.7
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 1.5e-09 66.2 70 51.4
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 2.0e-09 65.9 65 55.4
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 2.0e-09 65.9 83 49.4
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 3.4e-09 65.1 63 55.6
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 4.4e-09 64.7 69 52.2
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 5.8e-09 64.3 59 54.2
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 5.8e-09 64.3 63 55.6
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 7.6e-09 63.9 66 51.5
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.7e-08 62.8 96 42.7
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.7e-08 62.8 63 52.4
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 2.9e-08 62.0 88 46.6
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 3.8e-08 61.6 70 47.1
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 3.8e-08 61.6 61 52.5
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 6.4e-08 60.8 58 55.2
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 8.4e-08 60.5 61 49.2
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 1.1e-07 60.1 93 43.0
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.4e-07 59.7 93 41.9
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 1.9e-07 59.3 93 40.9
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 3.2e-07 58.5 67 50.7
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 3.2e-07 58.5 87 47.1
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 5.4e-07 57.8 63 49.2
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 2.1e-06 55.8 102 37.3
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 2.7e-06 55.5 86 40.7
Os06g0651200 Oryza sativa ssp. japonica HOM05D007802 ORTHO05D009879 2.7e-06 55.5 71 47.9


User provided reference genes

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