Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010923.2 Cucumis melo HOM05D007745 ORTHO05D009771 5.6e-212 740.7 389 100.0
CsaV3_2G028480 Cucumis sativus L. HOM05D007745 ORTHO05D009771 3.7e-147 525.4 336 86.3
ClCG08G015320 Citrullus lanatus HOM05D007745 ORTHO05D009771 3.0e-120 436.0 301 76.1
Sed0003155 Sechium edule HOM05D007745 ORTHO05D009771 1.6e-73 280.8 389 49.6
Sed0012259 Sechium edule HOM05D007745 ORTHO05D009771 1.4e-69 267.7 384 48.2
Manes.05G163200 Manihot esculenta HOM05D007745 ORTHO05D009771 5.7e-55 219.2 314 43.9
Sed0005896 Sechium edule HOM05D007745 ORTHO05D009771 1.0e-51 208.4 236 51.3
Potri.014G041300 Populus trichocarpa HOM05D007745 ORTHO05D009771 8.5e-51 205.3 368 38.0
Haze_17626 Corylus avellana HOM05D007745 ORTHO05D009771 1.4e-48 198.0 349 41.0
Prupe.1G383200 Prunus persica HOM05D007745 ORTHO05D009771 8.8e-48 195.3 346 39.0
Cfa018439 Carpinus fangiana HOM05D007745 ORTHO05D009771 8.3e-46 188.7 346 39.0
Ciclev10001389m.g Citrus clementina HOM05D007745 ORTHO05D009771 7.7e-44 182.2 396 35.9
Lj4A44T41 Lonicera japonica HOM05D007745 ORTHO05D009771 7.7e-44 182.2 359 35.9
Sed0002042 Sechium edule HOM05D007745 ORTHO05D009771 7.7e-44 182.2 182 53.8
CANSAT25G3090 Cannabis sativa HOM05D007745 ORTHO05D009771 1.9e-42 177.6 376 37.0
Dinv39385 Davidia involucrata HOM05D000626 ORTHO05D000824 1.8e-40 171.0 280 40.7
Dinv36046 Davidia involucrata HOM05D007745 ORTHO05D009771 1.2e-39 168.3 376 36.7
RcHm_v2.0_Chr6g0300521 Rosa chinensis HOM05D007745 ORTHO05D009771 1.5e-39 167.9 373 34.6
Duzib041G0319 Durio zibethinus HOM05D007745 ORTHO05D009771 8.3e-38 162.2 311 38.3
Gohir.A06G011800 Gossypium hirsutum HOM05D007745 ORTHO05D009771 1.4e-37 161.4 338 35.2
Sabra14G0030100 Salix brachista HOM05D007745 ORTHO05D009771 1.4e-37 161.4 328 35.7
GSVIVG01009651001 Vitis vinifera HOM05D007745 ORTHO05D009771 1.4e-37 161.4 344 35.8
Gohir.D06G009200 Gossypium hirsutum HOM05D007745 ORTHO05D009771 9.1e-37 158.7 381 33.6
FAN27G0058 Fragaria x ananassa HOM05D007745 ORTHO05D009771 5.9e-36 156.0 345 36.5
MD15G1032200 Malus domestica HOM05D007745 ORTHO05D009771 5.9e-36 156.0 361 35.7
Hma1.2p1_0203F.1_g086690 Hydrangea macrophylla HOM05D007745 ORTHO05D009771 1.3e-35 154.8 394 32.0
Gorai.010G012000 Gossypium raimondii HOM05D007745 ORTHO05D009771 3.8e-35 153.3 357 33.9
Actinidia22565 Actinidia chinensis HOM05D007745 ORTHO05D009771 8.6e-35 152.1 373 33.8
FvH4_2g40240 Fragaria vesca HOM05D007745 ORTHO05D009771 8.6e-35 152.1 345 36.2
FAN15G0796 Fragaria x ananassa HOM05D007745 ORTHO05D009771 1.9e-34 151.0 358 35.2
FAN20G1509 Fragaria x ananassa HOM05D007745 ORTHO05D009771 5.6e-34 149.4 352 35.8
Duzib093G2234 Durio zibethinus HOM05D007745 ORTHO05D009771 7.2e-34 149.1 322 37.0
vmacro21613 Vaccinium macrocarpon HOM05D007745 ORTHO05D009771 1.2e-33 148.3 339 34.2
Thecc.08G022500 Theobroma cacao HOM05D007745 ORTHO05D009771 4.7e-33 146.4 360 34.2
PGR031G1654 Punica granatum HOM05D007745 ORTHO05D009771 8.0e-33 145.6 331 35.6
Rhsim06G0036400 Rhododendron simsii HOM05D007745 ORTHO05D009771 2.3e-32 144.1 374 33.4
CSS0036766 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 4.0e-32 143.3 319 36.1
TAR628G0088 Trochodendron aralioides HOM05D007745 ORTHO05D009771 1.5e-31 141.4 356 29.5
MSTRG.24305 Avicennia marina HOM05D007745 ORTHO05D009771 2.0e-31 141.0 272 35.7
Eucgr.F01536 Eucalyptus grandis HOM05D007745 ORTHO05D009771 2.6e-31 140.6 356 32.0
Oeu015593.1 Olea europaea HOM05D007745 ORTHO05D009771 3.4e-31 140.2 382 33.0
Eucgr.F01538 Eucalyptus grandis HOM05D007745 ORTHO05D009771 4.4e-31 139.8 356 32.0
Eucgr.A00494 Eucalyptus grandis HOM05D007745 ORTHO05D009771 2.9e-30 137.1 337 34.7
ECA247G2825 Erigeron canadensis HOM05D000121 ORTHO05D001726 1.1e-29 135.2 310 32.9
Eucgr.F01537 Eucalyptus grandis HOM05D007745 ORTHO05D009771 1.1e-29 135.2 365 31.5
Eucgr.F01539 Eucalyptus grandis HOM05D007745 ORTHO05D009771 4.1e-29 133.3 357 31.9
QL02p007506 Quercus lobata HOM05D007745 ORTHO05D009771 2.7e-28 130.6 321 34.3
Peaxi162Scf00057g00084 Petunia axillaris HOM05D007745 ORTHO05D009771 8.6e-27 125.6 308 34.1
PGSC0003DMG400027855 Solanum tuberosum HOM05D007745 ORTHO05D009771 1.9e-26 124.4 297 30.0
Nn5g29499 Nelumbo nucifera HOM05D007745 ORTHO05D009771 2.5e-26 124.0 406 29.6
SalBow8G3493 Salvia bowleyana HOM05D007745 ORTHO05D009771 2.5e-26 124.0 308 32.8
SalBow8G4556 Salvia bowleyana HOM05D007745 ORTHO05D009771 2.5e-26 124.0 308 32.8
SGA_v2.0_scaffold14G07060 Striga asiatica HOM05D007745 ORTHO05D009771 2.5e-26 124.0 286 33.6
CiPaw.16G054300 Carya illinoinensis HOM05D007745 ORTHO05D009771 3.3e-26 123.6 291 36.4
Nitab4.5_0000110g0250 Nicotiana tabacum HOM05D007745 ORTHO05D009771 1.6e-25 121.3 338 30.8
CiPaw.15G073300 Carya illinoinensis HOM05D007745 ORTHO05D009771 8.0e-25 119.0 372 33.6
CAN.G1126.17 Capsicum annuum HOM05D007745 ORTHO05D009771 1.0e-24 118.6 253 33.6
HanXRQChr02g0038981 Helianthus annuus HOM05D007745 ORTHO05D009771 1.4e-24 118.2 269 34.2
Nitab4.5_0010511g0010 Nicotiana tabacum HOM05D007745 ORTHO05D009771 3.1e-24 117.1 257 32.7
CAN.G1126.15 Capsicum annuum HOM05D007745 ORTHO05D009771 5.2e-24 116.3 252 34.1
Gorai.009G204700 Gossypium raimondii HOM05D007745 ORTHO05D009771 6.8e-24 115.9 323 29.7
Gohir.A05G196400 Gossypium hirsutum HOM05D007745 ORTHO05D009771 8.9e-24 115.5 323 30.0
Sopen04g033520 Solanum pennellii HOM05D007745 ORTHO05D009771 1.2e-23 115.2 273 31.1
Gohir.D05G199500 Gossypium hirsutum HOM05D007745 ORTHO05D009771 1.5e-23 114.8 340 30.0
Solyc04g079940.3 Solanum lycopersicum HOM05D007745 ORTHO05D009771 2.0e-23 114.4 273 30.8
Sc02g0006490 Simmondsia chinensis HOM05D007745 ORTHO05D009771 2.6e-23 114.0 313 32.3
Nn1g05100 Nelumbo nucifera HOM05D000010 ORTHO05D009771 9.8e-23 112.1 273 34.1
DCAR_012752 Daucus carota HOM05D007745 ORTHO05D009771 1.7e-22 111.3 270 32.6
HanXRQChr09g0268481 Helianthus annuus HOM05D007745 ORTHO05D009771 8.3e-22 109.0 327 29.7
HanXRQChr04g0104891 Helianthus annuus HOM05D007745 ORTHO05D009771 4.1e-21 106.7 342 31.3
MSTRG.22294 Avicennia marina HOM05D007745 ORTHO05D009771 7.8e-20 102.4 252 30.6
MBI16_g27546_MAGBIO Magnolia biondii HOM05D007745 ORTHO05D009771 1.0e-19 102.1 257 31.9
MBI16_g33266_MAGBIO Magnolia biondii HOM05D007745 ORTHO05D009771 6.6e-19 99.4 270 30.7
Lsat_1_v5_gn_1_18141 Lactuca sativa HOM05D007745 ORTHO05D009771 8.6e-19 99.0 270 29.6
HanXRQChr04g0104881 Helianthus annuus HOM05D007745 ORTHO05D009771 1.1e-18 98.6 323 28.8
Cc10_g03330 Coffea canephora HOM05D007745 ORTHO05D009771 1.9e-18 97.8 257 31.5
ECA232G0976 Erigeron canadensis HOM05D007745 ORTHO05D009771 4.3e-18 96.7 321 29.3
Cpa.g.sc64.53 Carica papaya HOM05D007745 ORTHO05D009771 7.3e-18 95.9 240 30.0
Migut.N00516 Erythranthe guttata HOM05D007745 ORTHO05D009771 1.2e-17 95.1 354 27.4
PSO675G1126 Papaver somniferum HOM05D007745 ORTHO05D009771 1.6e-17 94.7 280 29.3
Eucgr.F01535 Eucalyptus grandis HOM05D007745 ORTHO05D009771 6.8e-16 89.4 158 32.3
HanXRQChr16g0508531 Helianthus annuus HOM05D007745 ORTHO05D009771 3.7e-14 83.6 313 30.4
PSO541G3078 Papaver somniferum HOM05D007745 ORTHO05D009771 3.7e-14 83.6 360 27.8
Lsat_1_v5_gn_4_122120 Lactuca sativa HOM05D007745 ORTHO05D009771 7.1e-13 79.3 317 26.8
Prupe.1G390000 Prunus persica HOM05D007745 ORTHO05D009771 1.3e-11 75.1 167 32.3
HPP92_020403 Vanilla planifolia HOM05D007745 ORTHO05D009771 2.5e-10 70.9 290 26.9
Lalb_Chr10g0104051 Lupinus albus HOM05D000010 ORTHO05D000063 2.3e-08 64.3 143 30.1
CSS0048958 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 2.0e-07 61.2 169 33.7
Glyma.11G212400 Glycine max HOM05D000010 ORTHO05D000063 2.0e-07 61.2 246 24.4
CSS0006031 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 5.8e-07 59.7 263 30.0
VMungo0540G0207 Vigna mungo HOM05D000010 ORTHO05D000063 9.9e-07 58.9 245 25.3
Cc07_g12760 Coffea canephora HOM05D000010 ORTHO05D000063 1.7e-06 58.2 143 26.6
THA.LOC104806103 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 1.7e-06 58.2 138 32.6
AL3G30860 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 2.2e-06 57.8 131 28.2
Ca_18568_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 2.2e-06 57.8 195 26.7
PSO832G4375 Papaver somniferum HOM05D000010 ORTHO05D000063 2.2e-06 57.8 186 25.8
Carub.0002s1185 Capsella rubella HOM05D000010 ORTHO05D000063 2.9e-06 57.4 188 28.7
CARHR057810 Cardamine hirsuta HOM05D000010 ORTHO05D000063 2.9e-06 57.4 140 28.6
Thhalv10021408m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 2.9e-06 57.4 131 28.2
Oeu045802.1 Olea europaea HOM05D000010 ORTHO05D000063 2.9e-06 57.4 143 27.3
Aa31LG8G4620 Aethionema arabicum HOM05D000010 ORTHO05D000063 3.7e-06 57.0 131 28.2
AL2G23290 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 3.7e-06 57.0 185 28.1
AT1G65910 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 3.7e-06 57.0 185 28.1
arahy.Tifrunner.gnm1.ann1.6RTE4A Arachis hypogaea HOM05D000010 ORTHO05D000063 3.7e-06 57.0 131 28.2
arahy.Tifrunner.gnm1.ann1.CRX62L Arachis hypogaea HOM05D000010 ORTHO05D000063 3.7e-06 57.0 131 28.2
A05p32130 Brassica napus HOM05D000010 ORTHO05D000063 3.7e-06 57.0 131 28.2
BraA05t22042Z Brassica rapa HOM05D000010 ORTHO05D000063 3.7e-06 57.0 131 28.2
Ca_05758_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 3.7e-06 57.0 142 26.1
Lsat_1_v5_gn_3_67400 Lactuca sativa HOM05D000010 ORTHO05D000063 3.7e-06 57.0 143 28.0
PGR004G2042 Punica granatum HOM05D000010 ORTHO05D000063 3.7e-06 57.0 151 26.5
SGA_v2.0_scaffold25G10763 Striga asiatica HOM05D000010 ORTHO05D000063 3.7e-06 57.0 198 26.3
Hma1.2p1_0034F.1_g021410 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 4.9e-06 56.6 143 25.9
BcaC05g28763 Brassica carinata HOM05D000010 ORTHO05D000063 6.4e-06 56.2 131 28.2
C05p48670 Brassica napus HOM05D000010 ORTHO05D000063 6.4e-06 56.2 131 28.2
BolC5t33602H Brassica oleracea HOM05D000010 ORTHO05D000063 6.4e-06 56.2 131 28.2
Eucgr.H00614 Eucalyptus grandis HOM05D000010 ORTHO05D000063 6.4e-06 56.2 131 28.2
HanXRQChr12g0365741 Helianthus annuus HOM05D000010 ORTHO05D000063 6.4e-06 56.2 143 27.3
Lalb_Chr15g0085221 Lupinus albus HOM05D000010 ORTHO05D000063 6.4e-06 56.2 143 25.9
MBI08_g16125_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 6.4e-06 56.2 195 25.1
Medtr6g477900 Medicago truncatula HOM05D000010 ORTHO05D000063 6.4e-06 56.2 196 26.0
PSO782G2931 Papaver somniferum HOM05D000010 ORTHO05D000063 6.4e-06 56.2 186 25.8
Psat1g031560 Pisum sativum HOM05D000010 ORTHO05D000063 6.4e-06 56.2 177 25.4
Sed0021151 Sechium edule HOM05D000010 ORTHO05D000063 6.4e-06 56.2 131 27.5
Actinidia40415 Actinidia chinensis HOM05D000010 ORTHO05D000063 8.4e-06 55.8 143 26.6
CiPaw.04G049700 Carya illinoinensis HOM05D000010 ORTHO05D000063 8.4e-06 55.8 143 26.6
Lsat_1_v5_gn_2_71740 Lactuca sativa HOM05D000010 ORTHO05D000063 8.4e-06 55.8 143 27.3
Phvul.006G087000 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 8.4e-06 55.8 242 23.1
Hund22203 Selenicereus undatus HOM05D000010 ORTHO05D000063 8.4e-06 55.8 143 26.6


User provided reference genes

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