Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 2.1e-97 359.0 180 100.0
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 2.4e-80 302.4 229 72.5
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 7.4e-66 254.2 210 68.1
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 8.2e-65 250.8 229 62.0
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 1.5e-50 203.4 235 51.5
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 9.1e-48 194.1 233 49.8
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 4.5e-47 191.8 234 49.1
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 4.5e-47 191.8 231 48.5
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 1.0e-46 190.7 228 50.9
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 1.3e-46 190.3 233 50.2
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.2e-46 189.5 232 47.8
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.2e-46 189.5 236 49.2
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 2.2e-46 189.5 233 49.4
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.8e-46 188.7 232 47.4
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 5.0e-46 188.3 231 47.6
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 6.5e-46 188.0 234 51.3
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 6.5e-46 188.0 234 48.7
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 8.5e-46 187.6 236 50.4
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 1.5e-45 186.8 216 52.3
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 1.5e-45 186.8 233 49.4
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.9e-45 186.4 223 49.8
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.9e-45 186.4 215 51.6
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.9e-45 186.4 231 46.3
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 2.5e-45 186.0 234 47.4
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.2e-45 185.3 232 46.6
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 5.5e-45 184.9 236 48.7
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 7.2e-45 184.5 233 48.1
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.4e-45 184.1 232 46.6
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.2e-44 183.7 234 48.3
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.6e-44 183.3 234 48.7
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.6e-44 182.2 180 54.4
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 4.7e-44 181.8 232 47.4
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.1e-44 181.4 208 52.4
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 6.1e-44 181.4 233 48.5
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 6.1e-44 181.4 223 48.9
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 8.0e-44 181.0 225 48.0
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 8.0e-44 181.0 233 48.5
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 1.0e-43 180.6 233 46.4
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.4e-43 180.3 221 49.8
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.4e-43 180.3 223 48.0
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.8e-43 179.9 227 46.7
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.8e-43 179.9 227 46.7
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 5.2e-43 178.3 234 45.3
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 6.7e-43 177.9 234 48.7
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 6.7e-43 177.9 223 48.9
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 2.6e-42 176.0 233 47.6
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 2.6e-42 176.0 228 48.2
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 3.3e-42 175.6 225 47.1
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 4.4e-42 175.3 230 46.1
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.3e-41 173.7 234 44.9
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 6.3e-41 171.4 234 46.6
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 4.1e-40 168.7 226 46.0
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 5.3e-40 168.3 230 46.5
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 1.2e-39 167.2 221 46.2
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.6e-39 166.8 232 43.5
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 2.0e-39 166.4 229 44.1
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 2.7e-39 166.0 218 45.4
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 3.5e-39 165.6 228 45.2
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 3.5e-39 165.6 239 43.5
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 5.9e-39 164.9 226 44.7
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 5.9e-39 164.9 223 46.6
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 1.0e-38 164.1 239 42.7
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.7e-38 163.3 223 44.8
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.7e-38 163.3 211 47.4
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 2.9e-38 162.5 217 46.1
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 3.8e-38 162.2 239 43.1
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 8.5e-38 161.0 223 44.4
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 8.5e-38 161.0 220 44.5
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 1.1e-37 160.6 232 45.3
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.5e-37 160.2 183 49.7
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 2.5e-37 159.5 223 43.9
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 2.5e-37 159.5 234 44.0
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 3.2e-37 159.1 237 44.7
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.5e-37 158.3 207 46.9
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 5.5e-37 158.3 235 44.7
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 1.2e-36 157.1 223 43.5
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 2.1e-36 156.4 231 42.9
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 2.7e-36 156.0 220 46.8
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.3e-35 152.9 211 46.0
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 4.0e-35 152.1 203 46.8
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.5e-34 150.2 277 36.5
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 4.4e-34 148.7 234 43.2
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 9.8e-34 147.5 224 42.9
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.7e-33 146.7 199 43.7
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 2.2e-33 146.4 205 43.4
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 2.8e-33 146.0 191 47.6
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 2.8e-33 146.0 198 45.5
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 3.7e-33 145.6 210 43.3
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 3.7e-33 145.6 229 42.4
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 4.8e-33 145.2 259 40.2
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 1.1e-32 144.1 208 44.7
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 4.5e-31 138.7 198 46.0
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.0e-30 137.5 256 38.3
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.1e-29 134.0 76 73.7
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.5e-29 133.7 76 76.3
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 4.2e-29 132.1 76 72.4
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 6.1e-28 128.3 76 73.7
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.0e-27 127.5 203 41.9
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.8e-25 119.4 231 37.7
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 3.7e-25 119.0 179 41.3
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 6.3e-25 118.2 201 38.8
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.4e-24 117.1 232 38.8
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 2.4e-24 116.3 76 67.1
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 5.4e-24 115.2 222 37.8
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 2.7e-23 112.8 138 45.7
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 7.8e-23 111.3 236 37.3
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 4.3e-21 105.5 210 36.7
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 6.1e-20 101.7 257 33.9
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 1.0e-19 100.9 68 63.2
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 4.0e-19 99.0 66 68.2
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 5.7e-18 95.1 56 71.4
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 7.5e-18 94.7 66 62.1
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 8.3e-17 91.3 181 39.8
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 4.1e-16 89.0 67 55.2
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 5.9e-15 85.1 49 79.6
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 7.8e-15 84.7 73 64.4
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 5.0e-14 82.0 181 39.2
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 5.0e-14 82.0 127 44.9
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.5e-13 80.5 50 68.0
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 9.5e-13 77.8 173 35.8
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 2.8e-12 76.3 185 33.0
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 1.1e-11 74.3 49 67.3
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 2.9e-09 66.2 190 31.6
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 1.1e-08 64.3 175 33.7
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.2e-08 61.2 71 53.5
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.6e-07 60.5 71 53.5
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 3.9e-06 55.8 29 82.8


User provided reference genes

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