Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 0.0e+00 1813.1 956 100.0
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 0.0e+00 1654.4 989 88.9
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 0.0e+00 1446.4 959 78.6
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 0.0e+00 1206.8 905 69.5
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 0.0e+00 1075.1 1035 57.7
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 2.4e-248 862.8 895 52.8
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 6.6e-246 854.7 881 53.1
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.4e-243 847.0 873 51.0
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 9.5e-237 824.3 883 52.4
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 8.4e-225 784.6 896 48.9
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 5.1e-222 775.4 1026 43.4
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.1e-221 774.2 898 46.8
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.5e-221 773.1 900 46.9
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 3.3e-221 772.7 911 47.9
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 3.3e-221 772.7 856 49.5
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.2e-220 770.8 862 50.7
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.0e-214 751.1 944 44.3
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.3e-214 750.0 898 46.1
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.0e-210 736.9 894 45.3
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 3.8e-209 732.6 874 46.6
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 1.2e-207 727.6 731 53.5
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 2.7e-207 726.5 876 45.5
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 1.3e-206 724.2 1066 40.8
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 7.4e-205 718.4 1035 42.4
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 4.0e-203 712.6 945 43.5
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 6.9e-203 711.8 1017 43.8
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 2.7e-199 699.9 876 47.1
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 3.5e-199 699.5 995 43.9
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 6.0e-199 698.7 868 46.8
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 6.0e-199 698.7 875 47.3
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.3e-198 697.6 1027 40.5
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.3e-198 696.8 946 43.9
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.3e-198 696.8 946 43.9
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 5.1e-198 695.7 877 46.8
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 5.6e-197 692.2 874 47.6
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 9.0e-195 684.9 869 48.8
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 2.0e-194 683.7 926 43.8
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 2.6e-194 683.3 865 47.1
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 5.8e-194 682.2 864 48.0
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 7.6e-194 681.8 863 46.9
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.7e-193 680.6 866 47.0
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.7e-193 680.6 866 47.0
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 6.5e-193 678.7 1018 42.7
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 1.4e-192 677.6 877 44.1
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.4e-192 677.6 1030 39.2
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 4.2e-192 676.0 880 45.1
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 9.3e-192 674.9 864 46.2
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.6e-191 674.1 904 44.6
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 2.7e-191 673.3 933 43.1
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 3.9e-190 669.5 978 40.3
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 1.1e-189 667.9 868 46.5
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 1.1e-189 667.9 871 46.4
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.5e-189 667.5 1077 39.6
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 5.7e-189 665.6 1083 39.2
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 1.1e-187 661.4 1035 39.6
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.5e-186 657.5 895 43.6
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 2.0e-186 657.1 1033 39.1
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 2.6e-186 656.8 967 44.4
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 7.7e-186 655.2 1087 38.5
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.4e-184 651.0 967 40.8
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 5.5e-184 649.0 949 41.2
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 1.0e-182 644.8 871 45.5
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 8.8e-182 641.7 861 43.7
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 1.1e-181 641.3 930 41.4
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 9.7e-181 638.3 967 40.4
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.1e-179 634.8 708 49.4
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 1.4e-179 634.4 965 40.8
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 6.9e-179 632.1 1067 37.9
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 5.0e-177 625.9 755 48.3
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.4e-176 624.4 1070 36.6
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-176 624.0 1018 41.3
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 5.5e-176 622.5 1161 36.3
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 9.4e-176 621.7 888 41.8
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 1.5e-173 614.4 1114 35.5
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.7e-172 610.9 873 41.2
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 3.7e-172 609.8 922 40.0
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 1.3e-169 601.3 1042 36.9
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 6.5e-169 599.0 945 40.0
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 6.1e-167 592.4 1001 36.6
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 8.8e-166 588.6 940 39.9
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.4e-165 585.5 792 43.2
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 9.7e-165 585.1 919 40.2
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 3.1e-163 580.1 882 40.8
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 5.3e-163 579.3 556 52.5
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.2e-162 578.2 919 39.7
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 3.5e-162 576.6 766 45.7
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.5e-160 570.5 1079 35.7
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 8.0e-159 565.5 882 39.7
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.4e-158 564.7 922 40.1
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 3.4e-157 560.1 870 40.3
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 5.7e-157 559.3 1032 35.7
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 5.7e-157 559.3 956 38.0
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.0e-153 548.5 1074 34.8
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 1.3e-148 531.6 881 39.0
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 5.4e-147 526.2 582 46.9
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 5.9e-146 522.7 655 45.3
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 1.9e-144 517.7 1200 32.0
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 4.2e-144 516.5 689 44.0
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 5.5e-144 516.2 1089 33.1
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 7.2e-144 515.8 894 38.3
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.4e-139 501.5 788 39.8
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 3.4e-133 480.3 852 36.0
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 1.5e-128 464.9 945 36.4
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 3.6e-127 460.3 624 42.5
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 7.1e-123 446.0 662 40.6
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 1.8e-118 431.4 866 35.0
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 3.4e-117 427.2 506 45.3
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 7.8e-114 416.0 359 56.5
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.6e-111 407.1 624 39.6
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.3e-105 387.9 521 42.8
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 3.4e-101 374.0 819 31.1
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 3.0e-97 360.9 863 29.8
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 4.9e-92 343.6 335 52.8
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 1.9e-91 341.7 853 30.5
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 4.5e-69 267.3 536 34.5
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 6.5e-68 263.5 305 45.6
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 2.3e-57 228.4 309 40.5
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 2.8e-55 221.5 319 43.6
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 1.5e-53 215.7 633 30.0
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.2e-50 206.1 216 49.5
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 2.6e-48 198.4 214 47.7
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 5.7e-48 197.2 488 31.8
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.7e-47 194.5 302 43.4
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.2e-45 189.5 360 32.2
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 7.7e-45 186.8 131 64.1
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 1.7e-44 185.7 390 37.9
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 3.1e-38 164.9 170 47.1
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.5e-35 155.2 234 40.2
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.1e-34 152.1 214 39.7
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 8.0e-34 150.2 100 66.0
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.5e-32 146.0 220 39.1
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.0e-32 145.6 351 31.9
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 2.8e-31 141.7 234 40.2
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.3e-31 140.2 248 41.9
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 2.7e-29 135.2 167 45.5
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.1e-26 125.6 85 64.7
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 2.3e-25 122.1 183 38.8
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 6.8e-25 120.6 228 37.7
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 9.8e-24 116.7 229 36.7
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.4e-17 96.3 530 24.5
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 1.4e-17 96.3 216 32.4
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 5.2e-17 94.4 156 39.7
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.1e-14 86.7 123 41.5
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.9e-12 78.2 209 27.8
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 1.6e-10 72.8 93 47.3
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 5.2e-09 67.8 51 52.9
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 4.4e-08 64.7 95 40.0
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 3.7e-07 61.6 275 23.6
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 5.4e-06 57.8 48 58.3


User provided reference genes

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