Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 2891.3 1505 100.0
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 2413.3 1401 90.9
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 2277.3 1400 86.8
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 2110.9 1404 80.1
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1495.3 1415 59.5
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1446.0 1422 58.2
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1432.9 1419 57.9
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1429.5 1415 57.7
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1417.9 1412 57.2
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1414.1 1412 57.1
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1400.6 1430 56.7
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1397.5 1412 56.4
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1395.6 1443 55.3
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1395.6 1548 52.9
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1392.5 1418 57.1
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1392.1 1414 55.7
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1370.9 1411 56.6
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1351.3 1417 54.8
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1340.9 1514 53.6
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1333.5 1420 54.9
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1330.5 1435 53.6
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1302.7 1417 53.8
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1295.0 1407 54.4
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1285.8 1401 53.5
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1282.3 1400 52.1
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1281.2 1423 51.9
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1277.7 1407 53.9
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1275.0 1417 52.3
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1270.8 1399 54.7
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1270.4 1400 54.7
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1269.6 1424 54.2
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1268.8 1405 52.5
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1263.1 1417 52.1
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1259.2 1402 52.9
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1256.5 1404 51.5
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1252.7 1414 53.4
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1250.0 1404 53.6
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1248.4 1414 51.5
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1247.6 1453 50.9
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1235.7 1453 50.7
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1227.2 1446 53.7
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1227.2 1455 49.6
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1220.3 1460 50.1
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1219.1 1455 50.1
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1216.4 1534 49.8
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1214.9 1404 52.8
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1208.7 1443 48.6
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1203.0 1427 49.1
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1201.0 1439 51.8
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1190.6 1424 49.8
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1185.6 1419 50.4
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1179.5 1440 52.2
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1177.2 1406 51.6
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1167.1 1420 49.4
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1161.4 1467 50.6
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1154.4 1416 48.0
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1151.0 1424 48.1
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1147.5 1412 49.2
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1135.6 1408 47.9
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1130.5 1424 48.2
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1125.9 1444 47.6
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1118.6 1429 47.3
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1115.1 1451 46.9
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1112.4 1410 47.9
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1109.0 1407 47.5
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1099.7 1435 46.7
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1099.3 1427 46.5
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1097.4 1423 47.4
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1095.9 1421 47.0
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1092.0 1421 46.9
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1090.5 1413 46.6
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1088.2 1414 46.0
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1086.6 1486 45.4
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1086.2 1429 46.7
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1086.2 1429 46.7
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1086.2 1429 46.7
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1080.5 1419 46.5
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1077.4 1415 48.4
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 4.5e-310 1068.5 1470 45.7
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 1.3e-309 1067.0 1409 45.9
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 3.9e-309 1065.4 1116 54.7
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 8.6e-309 1064.3 1414 45.5
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.1e-308 1063.9 1412 46.4
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 1.5e-308 1063.5 1440 48.2
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 7.3e-308 1061.2 1428 45.3
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 2.0e-305 1053.1 1413 45.0
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.3e-298 1029.6 1375 46.6
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 1.0e-293 1014.2 1330 48.9
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 2.9e-280 969.5 1416 43.9
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 5.4e-279 965.3 1419 46.9
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 5.6e-276 955.3 1438 42.4
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 4.5e-265 919.1 1144 48.1
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 1.0e-264 917.9 1420 41.6
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 4.7e-246 855.9 969 52.8
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 2.0e-241 840.5 1374 41.6
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 6.5e-232 808.9 945 51.6
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 4.4e-212 743.0 627 69.1
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 2.9e-208 730.3 863 50.4
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.2e-206 724.9 877 49.5
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 4.0e-197 693.3 788 53.2
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.6e-193 679.9 755 53.4
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 8.6e-192 675.6 744 53.5
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 2.1e-190 671.0 967 45.9
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 7.5e-188 662.5 480 75.6
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 2.1e-182 644.4 763 51.4
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.8e-182 644.0 536 69.6
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 4.9e-147 526.9 1327 30.7
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 5.5e-138 496.9 520 49.4
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 1.1e-135 489.2 358 70.7
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 3.3e-135 487.6 668 43.6
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 2.3e-128 464.9 1368 30.7
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 1.1e-125 456.1 1143 31.6
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 1.2e-124 452.6 1243 28.7
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 3.0e-120 438.0 521 47.6
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 1.1e-119 436.0 1348 28.4
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 4.5e-116 424.1 356 59.6
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 1.9e-114 418.7 1051 31.6
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.3e-104 385.2 417 47.7
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 9.8e-87 326.6 669 35.1
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.8e-81 308.5 439 41.0
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.7e-70 272.7 254 56.7
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.2e-70 272.3 326 44.2
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.1e-61 243.4 351 43.0
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 6.6e-59 234.2 336 44.3
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 3.2e-53 215.3 400 41.2
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 9.3e-45 187.2 242 47.1
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 5.3e-40 171.4 268 36.9
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.9e-37 162.9 382 34.0
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 5.7e-34 151.4 303 36.0
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 3.7e-33 148.7 204 47.1
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.9e-29 136.3 173 49.7
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 1.6e-28 133.3 305 35.1
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 6.1e-28 131.3 726 27.0
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.5e-26 126.7 120 60.0
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 4.1e-24 118.6 210 40.0
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 4.1e-24 118.6 90 63.3
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 1.5e-23 116.7 380 27.9
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.2e-22 112.8 141 46.1
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.9e-19 102.1 103 52.4
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 7.4e-18 97.8 391 24.3
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 2.5e-13 82.8 287 27.9
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.8e-08 66.6 69 50.7
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.0e-06 60.8 45 62.2
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 6.5e-06 58.2 140 30.7


User provided reference genes

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