Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 4.0e-38 161.0 85 100.0
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 3.2e-35 151.4 85 94.1
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 2.5e-24 115.2 74 83.8
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 4.8e-23 110.9 80 76.2
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 2.4e-14 82.0 83 57.8
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 4.1e-14 81.3 83 54.2
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 4.1e-14 81.3 85 52.9
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 9.0e-14 80.1 91 51.6
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.2e-13 79.7 85 51.8
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 2.0e-13 79.0 85 57.6
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.6e-13 78.6 77 57.1
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 4.5e-13 77.8 85 56.5
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.9e-13 77.4 81 55.6
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 7.7e-13 77.0 81 54.3
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.0e-12 76.6 86 52.3
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 1.0e-12 76.6 93 50.5
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 1.3e-12 76.3 85 51.8
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 1.3e-12 76.3 84 50.0
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.3e-12 76.3 81 56.8
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.7e-12 75.9 85 49.4
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.7e-12 75.9 85 49.4
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 2.2e-12 75.5 86 51.2
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 2.9e-12 75.1 90 48.9
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 2.9e-12 75.1 94 50.0
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 3.8e-12 74.7 87 51.7
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 3.8e-12 74.7 90 47.8
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.8e-12 74.7 86 53.5
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 5.0e-12 74.3 100 48.0
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 5.0e-12 74.3 86 50.0
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 6.5e-12 73.9 93 50.5
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 8.5e-12 73.6 80 52.5
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 8.5e-12 73.6 92 47.8
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.4e-11 72.8 89 50.6
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 1.9e-11 72.4 88 50.0
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 3.2e-11 71.6 94 47.9
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 3.2e-11 71.6 103 47.6
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 3.2e-11 71.6 93 44.1
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 3.2e-11 71.6 92 46.7
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 3.2e-11 71.6 85 50.6
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 4.2e-11 71.2 101 46.5
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 4.2e-11 71.2 81 51.9
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 5.5e-11 70.9 85 48.2
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.2e-10 69.7 90 46.7
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 1.2e-10 69.7 91 45.1
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 1.2e-10 69.7 76 52.6
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.6e-10 69.3 82 52.4
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 1.6e-10 69.3 88 46.6
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.1e-10 68.9 90 46.7
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 2.1e-10 68.9 85 48.2
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 2.1e-10 68.9 88 47.7
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.7e-10 68.6 90 46.7
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.7e-10 68.6 90 46.7
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 2.7e-10 68.6 85 47.1
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 2.7e-10 68.6 67 59.7
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.6e-10 67.8 90 45.6
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 4.6e-10 67.8 85 47.1
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 6.1e-10 67.4 91 49.5
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 6.1e-10 67.4 52 61.5
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 6.1e-10 67.4 101 47.5
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 1.0e-09 66.6 90 43.3
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.0e-09 66.6 85 47.1
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 2.3e-09 65.5 90 46.7
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 3.0e-09 65.1 101 41.6
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.0e-09 65.1 90 48.9
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 3.0e-09 65.1 109 42.2
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 3.9e-09 64.7 74 51.4
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 3.9e-09 64.7 74 54.1
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 3.9e-09 64.7 111 40.5
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 3.9e-09 64.7 81 48.1
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 3.9e-09 64.7 94 43.6
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 5.1e-09 64.3 90 48.9
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 5.1e-09 64.3 90 48.9
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 5.1e-09 64.3 90 48.9
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 5.1e-09 64.3 39 76.9
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 5.1e-09 64.3 107 40.2
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 5.1e-09 64.3 90 48.9
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 5.1e-09 64.3 65 58.5
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 6.7e-09 63.9 39 76.9
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 6.7e-09 63.9 89 44.9
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 6.7e-09 63.9 93 43.0
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 8.8e-09 63.5 74 52.7
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 8.8e-09 63.5 74 52.7
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 8.8e-09 63.5 74 52.7
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 1.1e-08 63.2 71 52.1
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 1.1e-08 63.2 48 64.6
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 1.1e-08 63.2 73 50.7
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 1.1e-08 63.2 85 41.2
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 1.1e-08 63.2 94 42.6
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 1.5e-08 62.8 70 51.4
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 1.5e-08 62.8 63 58.7
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 1.5e-08 62.8 39 76.9
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.5e-08 62.8 69 52.2
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 1.5e-08 62.8 82 47.6
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 1.5e-08 62.8 86 44.2
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 1.9e-08 62.4 57 50.9
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 3.3e-08 61.6 55 56.4
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 3.3e-08 61.6 44 65.9
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 3.3e-08 61.6 44 65.9
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 7.4e-08 60.5 63 50.8
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 9.7e-08 60.1 44 63.6
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 9.7e-08 60.1 44 63.6
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 1.3e-07 59.7 67 52.2
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 1.7e-07 59.3 39 69.2
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.7e-07 59.3 86 41.9
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 2.2e-07 58.9 78 46.2
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 4.8e-07 57.8 75 50.7
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 8.2e-07 57.0 84 45.2
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 8.2e-07 57.0 84 42.9
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 8.2e-07 57.0 102 43.1
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 1.1e-06 56.6 86 39.5
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 1.4e-06 56.2 97 41.2
Aqoxy4G00063 Aquilegia oxysepala HOM05D006325 ORTHO05D007878 1.8e-06 55.8 80 43.8
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.8e-06 55.8 95 38.9
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 3.1e-06 55.1 39 66.7
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 5.3e-06 54.3 95 40.0
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 5.3e-06 54.3 38 68.4
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 5.3e-06 54.3 79 46.8
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 6.9e-06 53.9 88 38.6


User provided reference genes

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