Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.7e-58 229.2 117 100.0
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.3e-52 208.8 117 94.9
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 6.8e-44 180.6 117 84.6
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.4e-28 129.8 107 71.0
Sed0002184 Sechium edule HOM05D003683 ORTHO05D004143 1.7e-18 96.3 101 59.4
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-14 83.6 80 61.2
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.5e-14 82.4 97 57.7
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.6e-14 81.3 84 56.0
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.6e-13 79.7 83 60.2
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.2e-13 77.8 83 61.4
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 6.2e-13 77.8 86 57.0
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 6.2e-13 77.8 103 52.4
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.1e-13 77.4 74 58.1
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.4e-12 76.6 120 46.7
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.8e-12 76.3 84 59.5
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 2.3e-12 75.9 120 46.7
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.3e-12 75.9 120 46.7
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 4.0e-12 75.1 119 47.9
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 5.2e-12 74.7 68 64.7
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.2e-12 74.7 84 56.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.8e-12 74.3 102 52.0
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.8e-12 74.3 120 45.8
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 6.8e-12 74.3 77 58.4
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.9e-12 73.9 119 46.2
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 8.9e-12 73.9 101 50.5
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.0e-11 72.8 71 62.0
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 2.6e-11 72.4 96 49.0
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 2.6e-11 72.4 67 59.7
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 4.4e-11 71.6 79 53.2
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 5.8e-11 71.2 99 50.5
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 5.8e-11 71.2 90 52.2
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 1.3e-10 70.1 89 50.6
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.7e-10 69.7 90 46.7
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.7e-10 69.7 72 56.9
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 1.7e-10 69.7 107 47.7
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.2e-10 69.3 74 55.4
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 2.9e-10 68.9 65 56.9
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.9e-10 68.9 109 45.9
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.9e-10 68.9 79 54.4
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.7e-10 68.6 75 50.7
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.7e-10 68.6 43 81.4
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.9e-10 68.2 78 59.0
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 6.4e-10 67.8 80 52.5
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 8.3e-10 67.4 94 43.6
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-09 67.0 75 49.3
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-09 67.0 75 49.3
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.1e-09 67.0 54 66.7
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.1e-09 67.0 46 71.7
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.4e-09 66.6 93 46.2
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.4e-09 66.6 87 50.6
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 1.4e-09 66.6 43 76.7
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 1.4e-09 66.6 93 49.5
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.4e-09 66.6 81 46.9
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.9e-09 66.2 75 50.7
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.9e-09 66.2 66 59.1
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.9e-09 66.2 94 47.9
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 1.9e-09 66.2 78 55.1
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 2.4e-09 65.9 76 51.3
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 2.4e-09 65.9 90 45.6
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.4e-09 65.9 46 78.3
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.4e-09 65.9 46 78.3
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 3.2e-09 65.5 74 52.7
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 3.2e-09 65.5 73 53.4
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 4.1e-09 65.1 87 47.1
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.1e-09 65.1 90 45.6
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 4.1e-09 65.1 46 71.7
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.1e-09 65.1 86 50.0
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 5.4e-09 64.7 92 48.9
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 5.4e-09 64.7 92 48.9
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 5.4e-09 64.7 92 48.9
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 5.4e-09 64.7 92 48.9
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 5.4e-09 64.7 92 48.9
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 7.1e-09 64.3 42 71.4
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 9.2e-09 63.9 92 48.9
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 9.2e-09 63.9 82 48.8
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 9.2e-09 63.9 66 57.6
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.2e-09 63.9 41 75.6
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 1.2e-08 63.5 44 70.5
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.2e-08 63.5 86 46.5
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.2e-08 63.5 74 52.7
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.2e-08 63.5 99 42.4
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.2e-08 63.5 99 42.4
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 1.6e-08 63.2 82 47.6
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.6e-08 63.2 74 50.0
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.6e-08 63.2 73 54.8
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.6e-08 63.2 91 48.4
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 2.1e-08 62.8 92 47.8
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 2.1e-08 62.8 92 47.8
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 2.1e-08 62.8 92 48.9
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 2.1e-08 62.8 92 47.8
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.1e-08 62.8 92 48.9
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.1e-08 62.8 93 47.3
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 2.1e-08 62.8 87 48.3
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 2.1e-08 62.8 81 50.6
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 2.1e-08 62.8 71 50.7
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.1e-08 62.8 92 48.9
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 2.7e-08 62.4 91 45.1
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 2.7e-08 62.4 85 47.1
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.7e-08 62.4 85 47.1
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.7e-08 62.4 71 46.5
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.7e-08 62.4 82 46.3
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 6.0e-08 61.2 92 47.8
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 6.0e-08 61.2 92 47.8
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 6.0e-08 61.2 92 47.8
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 6.0e-08 61.2 88 43.2
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 6.0e-08 61.2 65 56.9
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 6.0e-08 61.2 74 51.4
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 7.8e-08 60.8 68 47.1
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 7.8e-08 60.8 92 48.9
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 7.8e-08 60.8 85 47.1
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 7.8e-08 60.8 82 46.3
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.0e-07 60.5 93 43.0
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.0e-07 60.5 82 45.1
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.0e-07 60.5 70 54.3
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-07 60.1 92 46.7
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.3e-07 60.1 84 44.0
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.3e-07 60.1 93 45.2
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 1.3e-07 60.1 87 46.0
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.3e-07 60.1 89 46.1
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-07 60.1 74 50.0
Gorai.007G092100 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.3e-07 60.1 84 46.4
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.7e-07 59.7 92 47.8
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.7e-07 59.7 91 48.4
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.7e-07 59.7 93 44.1
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 1.7e-07 59.7 90 44.4
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.7e-07 59.7 73 53.4
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.7e-07 59.7 69 53.6
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 2.3e-07 59.3 92 42.4
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 3.0e-07 58.9 102 39.2
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 3.0e-07 58.9 75 48.0
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.9e-07 58.5 42 66.7
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 3.9e-07 58.5 73 47.9
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 3.9e-07 58.5 73 49.3
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 5.1e-07 58.2 92 44.6
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 5.1e-07 58.2 88 42.0
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 5.1e-07 58.2 92 44.6
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 5.1e-07 58.2 92 44.6
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 6.6e-07 57.8 106 38.7
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 6.6e-07 57.8 42 64.3
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 8.6e-07 57.4 97 40.2
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 8.6e-07 57.4 97 41.2
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-06 57.0 92 45.7
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-06 57.0 88 42.0
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 1.1e-06 57.0 77 46.8
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.1e-06 57.0 51 62.7
Os09g0520500 Oryza sativa ssp. japonica HOM05D003683 ORTHO05D004143 1.1e-06 57.0 60 51.7
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 1.5e-06 56.6 41 70.7
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.5e-06 56.6 90 45.6
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.5e-06 56.6 63 50.8
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-06 56.2 86 41.9
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.9e-06 56.2 51 58.8
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 2.5e-06 55.8 70 48.6
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.5e-06 55.8 42 61.9
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 2.5e-06 55.8 39 71.8
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 2.5e-06 55.8 53 54.7
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 3.3e-06 55.5 41 65.9
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 3.3e-06 55.5 41 65.9
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 4.3e-06 55.1 90 41.1
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 5.6e-06 54.7 96 45.8
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 5.6e-06 54.7 46 63.0
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 7.3e-06 54.3 93 44.1
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 7.3e-06 54.3 73 46.6
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 9.5e-06 53.9 69 49.3
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.5e-06 53.9 42 64.3
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 9.5e-06 53.9 84 46.4


User provided reference genes

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