Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 2.9e-121 438.7 247 100.0
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 2.2e-116 422.5 246 95.1
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 3.3e-80 302.4 242 75.6
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 1.8e-54 216.9 245 55.1
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 7.6e-53 211.5 239 54.4
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 6.4e-52 208.4 246 54.1
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 1.4e-51 207.2 246 56.1
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 7.1e-51 204.9 246 52.4
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.2e-50 204.1 246 52.0
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.7e-50 203.0 246 52.0
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 3.5e-50 202.6 246 54.9
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 1.0e-49 201.1 246 54.5
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 3.9e-49 199.1 251 54.2
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 9.6e-48 194.5 247 42.9
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 1.1e-46 191.0 253 51.0
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 1.8e-46 190.3 241 46.1
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 4.0e-46 189.1 249 43.8
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 4.0e-46 189.1 239 39.7
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 7.6e-45 184.9 251 51.8
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 1.3e-44 184.1 239 44.4
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 2.9e-44 183.0 237 40.5
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 1.3e-41 174.1 237 47.3
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 3.0e-41 172.9 236 40.7
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 3.0e-41 172.9 241 41.1
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 5.6e-40 168.7 238 50.4
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 6.2e-39 165.2 247 41.7
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 2.4e-38 163.3 239 47.7
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 5.3e-38 162.2 236 47.9
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 6.9e-38 161.8 235 43.8
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 2.0e-37 160.2 235 46.8
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.6e-37 159.8 240 41.7
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 9.9e-37 157.9 240 41.2
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 1.7e-36 157.1 241 40.2
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.9e-36 156.4 235 41.7
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 3.8e-36 156.0 238 47.5
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 4.9e-36 155.6 245 39.6
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 8.4e-36 154.8 249 39.4
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 1.1e-35 154.5 234 47.0
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.4e-35 154.1 244 45.9
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 2.4e-35 153.3 249 43.0
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 4.2e-35 152.5 237 38.8
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 4.2e-35 152.5 246 42.3
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 5.4e-35 152.1 246 45.5
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 9.3e-35 151.4 255 40.8
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 9.3e-35 151.4 255 40.8
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 7.9e-34 148.3 244 38.5
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 7.9e-34 148.3 254 40.6
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 7.9e-34 148.3 254 40.6
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 7.9e-34 148.3 254 40.6
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.3e-33 147.5 249 36.5
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 3.0e-33 146.4 259 42.5
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 3.9e-33 146.0 249 35.3
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 3.9e-33 146.0 241 44.4
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 5.1e-33 145.6 250 39.2
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 5.1e-33 145.6 249 35.3
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 6.6e-33 145.2 259 42.1
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 6.6e-33 145.2 243 43.6
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 1.5e-32 144.1 259 42.1
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.5e-32 144.1 249 36.1
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 3.3e-32 142.9 248 42.3
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 3.3e-32 142.9 248 42.3
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 3.3e-32 142.9 248 39.9
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 3.3e-32 142.9 248 39.9
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 4.3e-32 142.5 255 42.7
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 5.6e-32 142.1 257 42.4
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 7.3e-32 141.7 255 38.0
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 9.6e-32 141.4 245 35.1
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.6e-31 140.6 245 35.9
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 1.6e-31 140.6 241 43.2
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 3.6e-31 139.4 247 37.7
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 6.2e-31 138.7 251 40.6
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 8.1e-31 138.3 248 41.9
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 8.1e-31 138.3 248 41.9
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 8.1e-31 138.3 257 41.6
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 8.1e-31 138.3 246 41.9
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 1.4e-30 137.5 254 41.3
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 4.0e-30 136.0 250 38.0
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 5.3e-30 135.6 245 36.7
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 5.3e-30 135.6 250 40.0
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 1.5e-29 134.0 253 41.1
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 1.5e-29 134.0 247 40.9
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 2.6e-29 133.3 245 41.2
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 4.5e-29 132.5 245 40.8
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 5.8e-29 132.1 249 32.1
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 5.8e-29 132.1 255 38.4
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 5.8e-29 132.1 244 33.2
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 7.6e-29 131.7 253 40.3
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 9.9e-29 131.3 236 41.5
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 9.9e-29 131.3 262 36.3
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 1.3e-28 131.0 249 38.6
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.7e-28 130.6 243 34.6
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 1.7e-28 130.6 236 41.9
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 1.7e-28 130.6 244 41.0
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 2.2e-28 130.2 250 40.4
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 2.9e-28 129.8 257 37.4
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 2.9e-28 129.8 248 37.1
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 2.9e-28 129.8 247 35.2
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 2.9e-28 129.8 250 44.0
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 4.9e-28 129.0 252 40.1
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 6.4e-28 128.6 241 43.6
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 1.1e-27 127.9 248 38.7
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 1.4e-27 127.5 247 41.7
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.4e-27 127.5 256 39.8
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.4e-27 127.5 253 39.5
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 2.4e-27 126.7 250 38.4
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 2.4e-27 126.7 252 39.7
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 3.2e-27 126.3 239 41.8
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 3.2e-27 126.3 248 42.3
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 3.2e-27 126.3 229 39.7
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 4.2e-27 125.9 252 41.3
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 4.2e-27 125.9 255 36.9
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 7.1e-27 125.2 234 39.7
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 9.3e-27 124.8 241 42.3
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 9.3e-27 124.8 244 39.8
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 1.2e-26 124.4 239 41.4
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 1.2e-26 124.4 245 38.4
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 1.6e-26 124.0 261 36.0
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 1.6e-26 124.0 255 37.3
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 2.1e-26 123.6 246 40.2
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 3.5e-26 122.9 260 36.9
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 3.5e-26 122.9 175 39.4
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 4.6e-26 122.5 246 40.2
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 6.0e-26 122.1 241 33.6
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 6.7e-25 118.6 248 37.9
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 3.3e-24 116.3 234 38.0
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 5.6e-24 115.5 159 35.8
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 7.4e-24 115.2 249 30.9
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 6.2e-23 112.1 253 37.5
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.1e-22 111.3 142 42.3
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 1.2e-21 107.8 168 35.1
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 2.6e-21 106.7 234 36.3
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 2.6e-21 106.7 238 38.7
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 3.4e-21 106.3 202 35.6
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 7.6e-21 105.1 220 39.5
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 2.2e-20 103.6 245 37.1
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 7.1e-19 98.6 248 39.9
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 3.5e-18 96.3 103 49.5
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 5.1e-17 92.4 191 42.9
AUR62023503 Chenopodium quinoa HOM05D005178 ORTHO05D006123 8.4e-12 75.1 120 35.8
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 1.4e-11 74.3 98 34.7
MELO3C020481.2 Cucumis melo HOM05D008517 ORTHO05D010482 1.2e-10 71.2 175 28.6
AUR62004447 Chenopodium quinoa HOM05D005178 ORTHO05D006123 2.7e-10 70.1 120 34.2
CANSAT56G2000 Cannabis sativa HOM05D002137 ORTHO05D002144 1.3e-09 67.8 140 27.9
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 1.3e-09 67.8 128 28.1
Potri.001G200700 Populus trichocarpa HOM05D002137 ORTHO05D002144 1.3e-09 67.8 177 27.7
MSTRG.12716 Avicennia marina HOM05D008517 ORTHO05D010482 3.0e-09 66.6 170 25.9
ClCG03G000030 Citrullus lanatus HOM05D008517 ORTHO05D010482 3.0e-09 66.6 173 26.0
Manes.11G026200 Manihot esculenta HOM05D002137 ORTHO05D002144 3.0e-09 66.6 177 26.0
Sp4g13060 Schrenkiella parvula HOM05D008517 ORTHO05D010482 5.1e-09 65.9 158 29.7
BcaC01g05087 Brassica carinata HOM05D001597 ORTHO05D001512 4.3e-08 62.8 170 28.8
MSTRG.4769 Avicennia marina HOM05D002137 ORTHO05D002144 7.4e-08 62.0 152 27.0
DCAR_016157 Daucus carota HOM05D002137 ORTHO05D002144 7.4e-08 62.0 177 28.2
Lj3g0017057 Lotus japonicus HOM05D002137 ORTHO05D002144 7.4e-08 62.0 155 29.0
Nn6g35491 Nelumbo nucifera HOM05D002137 ORTHO05D002144 9.7e-08 61.6 178 27.0
PGR119G1844 Punica granatum HOM05D008517 ORTHO05D010482 9.7e-08 61.6 176 27.3
AL6G22650 Arabidopsis lyrata HOM05D002137 ORTHO05D002144 1.3e-07 61.2 164 26.8
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 1.3e-07 61.2 170 26.5
SalBow6G2279 Salvia bowleyana HOM05D002137 ORTHO05D002144 2.2e-07 60.5 154 26.0
SalBow6G5101 Salvia bowleyana HOM05D002137 ORTHO05D002144 2.2e-07 60.5 154 26.0
AT5G11890 Arabidopsis thaliana HOM05D002137 ORTHO05D002144 2.8e-07 60.1 164 27.4
Rhsim13G0058200 Rhododendron simsii HOM05D008517 ORTHO05D010482 4.8e-07 59.3 157 22.9
HPP92_008777 Vanilla planifolia HOM05D002137 ORTHO05D002144 4.8e-07 59.3 152 27.6
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 6.3e-07 58.9 167 27.5
Migut.I01027 Erythranthe guttata HOM05D002137 ORTHO05D002144 6.3e-07 58.9 156 27.6
AL4G25390 Arabidopsis lyrata HOM05D008517 ORTHO05D010482 1.4e-06 57.8 155 27.1
Hund19448 Selenicereus undatus HOM05D002137 ORTHO05D002144 1.4e-06 57.8 156 33.3
PGR004G2871 Punica granatum HOM05D000973 ORTHO05D000652 2.4e-06 57.0 180 26.7
SGA_v2.0_scaffold68G22917 Striga asiatica HOM05D002137 ORTHO05D002144 2.4e-06 57.0 154 27.3
Cc01_g10170 Coffea canephora HOM05D000980 ORTHO05D000649 3.1e-06 56.6 142 33.8
FAN13G2261 Fragaria x ananassa HOM05D000973 ORTHO05D000652 3.1e-06 56.6 149 26.8
Aa31LG3G15310 Aethionema arabicum HOM05D002137 ORTHO05D002144 4.1e-06 56.2 164 24.4
BcaNung02648 Brassica carinata HOM05D002137 ORTHO05D002144 4.1e-06 56.2 164 26.2
Sed0007690 Sechium edule HOM05D008517 ORTHO05D010482 5.3e-06 55.8 154 32.5
BolC9t59324H Brassica oleracea HOM05D002137 ORTHO05D002144 6.9e-06 55.5 164 27.4
CiPaw.15G038400 Carya illinoinensis HOM05D002137 ORTHO05D002144 6.9e-06 55.5 153 24.2
Mapoly0067s0044 Marchantia polymorpha HOM05D000973 ORTHO05D000652 6.9e-06 55.5 136 30.1
Sabra12G0109300 Salix brachista HOM05D000973 ORTHO05D000652 6.9e-06 55.5 157 32.5
SGA_v2.0_scaffold4G02042 Striga asiatica HOM05D002137 ORTHO05D002144 6.9e-06 55.5 107 30.8
C09p64940 Brassica napus HOM05D002137 ORTHO05D002144 9.0e-06 55.1 164 26.8


User provided reference genes

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