Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C005521.2 Cucumis melo HOM05D006567 ORTHO05D009430 4.0e-215 751.1 373 100.0
CsaV3_5G004320 Cucumis sativus L. HOM05D006567 ORTHO05D009430 2.3e-207 725.3 373 95.7
ClCG01G004160 Citrullus lanatus HOM05D006567 ORTHO05D009430 1.4e-188 662.9 380 87.4
QL12p011664 Quercus lobata HOM05D006567 ORTHO05D009430 1.7e-181 639.4 372 83.3
Cfa015824 Carpinus fangiana HOM05D006567 ORTHO05D009430 3.2e-180 635.2 372 80.6
Sabra03G0048700 Salix brachista HOM05D006567 ORTHO05D009430 3.2e-180 635.2 372 81.5
Glyma.05G061300 Glycine max HOM05D006567 ORTHO05D009430 1.2e-179 633.3 362 83.4
Potri.003G078500 Populus trichocarpa HOM05D006567 ORTHO05D009430 1.2e-179 633.3 371 80.6
COL.COLO4_37145 Corchorus olitorius HOM05D006567 ORTHO05D009430 6.0e-179 630.9 363 82.1
MD04G1062400 Malus domestica HOM05D006567 ORTHO05D009430 6.0e-179 630.9 371 81.9
VMungo0251G1330 Vigna mungo HOM05D006567 ORTHO05D009430 1.8e-178 629.4 362 81.8
arahy.Tifrunner.gnm1.ann1.E0WBQ7 Arachis hypogaea HOM05D006567 ORTHO05D009430 2.3e-178 629.0 362 82.9
arahy.Tifrunner.gnm1.ann1.69E4XE Arachis hypogaea HOM05D006567 ORTHO05D009430 6.7e-178 627.5 362 82.9
Lj4g0021343 Lotus japonicus HOM05D006567 ORTHO05D009430 6.7e-178 627.5 368 81.8
Lalb_Chr05g0221201 Lupinus albus HOM05D006567 ORTHO05D009430 1.1e-177 626.7 363 82.4
Ca_21975_v3 Cicer arietinum L. HOM05D006567 ORTHO05D009430 1.5e-177 626.3 369 81.6
Medtr4g100760 Medicago truncatula HOM05D006567 ORTHO05D009430 1.9e-177 625.9 369 81.0
CANSAT21G0369 Cannabis sativa HOM05D006567 ORTHO05D009430 2.5e-177 625.5 365 82.2
TPR.G37608 Trifolium pratense HOM05D006567 ORTHO05D009430 2.5e-177 625.5 364 82.1
Psat4g072680 Pisum sativum HOM05D006567 ORTHO05D009430 3.3e-177 625.2 372 79.8
RcHm_v2.0_Chr7g0203711 Rosa chinensis HOM05D006567 ORTHO05D009430 1.3e-176 623.2 373 80.4
FAN08G1209 Fragaria x ananassa HOM05D006567 ORTHO05D009430 2.1e-176 622.5 373 80.7
Hund11604 Selenicereus undatus HOM05D006567 ORTHO05D009430 2.1e-176 622.5 365 81.1
FAN18G0654 Fragaria x ananassa HOM05D006567 ORTHO05D009430 4.8e-176 621.3 367 80.7
PGR031G0713 Punica granatum HOM05D006567 ORTHO05D009430 4.8e-176 621.3 366 80.1
Thecc.03G249000 Theobroma cacao HOM05D006567 ORTHO05D009430 6.2e-176 620.9 362 81.8
Aqoxy7G00822 Aquilegia oxysepala HOM05D006567 ORTHO05D009430 8.2e-176 620.5 363 81.3
TWI81G0123 Tripterygium wilfordii HOM05D006567 ORTHO05D009430 1.4e-175 619.8 364 81.3
FAN04G2727 Fragaria x ananassa HOM05D006567 ORTHO05D009430 1.8e-175 619.4 369 80.8
SalBow6G6157 Salvia bowleyana HOM05D006567 ORTHO05D009430 4.0e-175 618.2 364 79.7
TAR636G1533 Trochodendron aralioides HOM05D006567 ORTHO05D009430 4.0e-175 618.2 362 81.5
vmacro00188 Vaccinium macrocarpon HOM05D006567 ORTHO05D009430 6.9e-175 617.5 362 79.8
CSS0024870 Camellia sinensis var. sinensis HOM05D006567 ORTHO05D009430 1.5e-174 616.3 363 80.4
Atru.chr9.1289 Acer truncatum HOM05D006567 ORTHO05D009430 2.0e-174 615.9 369 79.7
Phvul.003G221900 Phaseolus vulgaris HOM05D006567 ORTHO05D009430 2.0e-174 615.9 362 80.9
MSTRG.12113 Avicennia marina HOM05D006567 ORTHO05D009430 2.6e-174 615.5 363 80.7
Gohir.D12G218600 Gossypium hirsutum HOM05D006567 ORTHO05D009430 2.6e-174 615.5 365 80.0
Gorai.008G234200 Gossypium raimondii HOM05D006567 ORTHO05D009430 2.6e-174 615.5 365 80.3
Eucgr.D02095 Eucalyptus grandis HOM05D006567 ORTHO05D009430 3.4e-174 615.1 362 81.8
Duzib084G0744 Durio zibethinus HOM05D006567 ORTHO05D009430 4.5e-174 614.8 362 80.4
Actinidia14413 Actinidia chinensis HOM05D006567 ORTHO05D009430 5.8e-174 614.4 361 80.6
Ciclev10020637m.g Citrus clementina HOM05D006567 ORTHO05D009430 2.2e-173 612.5 362 80.7
Cpa.g.sc29.179 Carica papaya HOM05D006567 ORTHO05D009430 4.9e-173 611.3 363 80.4
Gohir.A12G216000 Gossypium hirsutum HOM05D006567 ORTHO05D009430 1.1e-172 610.1 371 79.0
Ah.12g054200 Amaranthus hybridus HOM05D006567 ORTHO05D006679 2.5e-172 609.0 373 77.2
Nn1g00949 Nelumbo nucifera HOM05D006567 ORTHO05D009430 3.2e-172 608.6 361 80.3
Cc08_g12240 Coffea canephora HOM05D006567 ORTHO05D009430 5.5e-172 607.8 368 78.5
HanXRQChr13g0417851 Helianthus annuus HOM05D006567 ORTHO05D009430 4.6e-171 604.7 363 77.1
Peaxi162Scf00209g00122 Petunia axillaris HOM05D006567 ORTHO05D009430 6.0e-171 604.4 361 78.9
Haze_00669 Corylus avellana HOM05D006567 ORTHO05D009430 5.1e-170 601.3 403 73.2
Migut.A01121 Erythranthe guttata HOM05D006567 ORTHO05D009430 5.1e-170 601.3 363 78.8
PGSC0003DMG400004822 Solanum tuberosum HOM05D006567 ORTHO05D009430 5.7e-169 597.8 361 77.8
DCAR_004966 Daucus carota HOM05D006567 ORTHO05D009430 9.6e-169 597.0 360 78.1
Sopen08g026950 Solanum pennellii HOM05D006567 ORTHO05D009430 9.6e-169 597.0 361 78.1
Solyc08g078460.3 Solanum lycopersicum HOM05D006567 ORTHO05D009430 4.8e-168 594.7 361 77.6
ECA240G4587 Erigeron canadensis HOM05D006567 ORTHO05D009430 2.4e-167 592.4 360 76.4
MBI04_g09522_MAGBIO Magnolia biondii HOM05D006567 ORTHO05D009430 3.1e-167 592.0 363 77.1
Lsat_1_v5_gn_6_92541 Lactuca sativa HOM05D006567 ORTHO05D009430 1.5e-166 589.7 361 76.2
CAN.G1178.26 Capsicum annuum HOM05D006567 ORTHO05D009430 3.4e-166 588.6 361 77.0
EL10Ac5g12369 Beta vulgaris HOM05D006567 ORTHO05D009430 7.6e-166 587.4 370 75.7
AUR62019967 Chenopodium quinoa HOM05D006567 ORTHO05D009430 3.8e-165 585.1 352 77.6
CARHR223980 Cardamine hirsuta HOM05D006567 ORTHO05D009430 6.5e-165 584.3 360 76.9
EL10Ac5g12374 Beta vulgaris HOM05D006567 ORTHO05D009430 8.5e-165 583.9 362 76.8
Thhalv10025513m.g Eutrema salsugineum HOM05D006567 ORTHO05D009430 1.9e-164 582.8 362 76.5
Carub.0007s2404 Capsella rubella HOM05D006567 ORTHO05D009430 4.2e-164 581.6 360 76.7
ATR0057G105 Amborella trichopoda HOM05D006567 ORTHO05D009430 2.7e-163 578.9 364 75.0
PSO017G4082 Papaver somniferum HOM05D006567 ORTHO05D009430 3.6e-163 578.6 389 72.8
SGA_v2.0_scaffold26G11306 Striga asiatica HOM05D006567 ORTHO05D009430 1.0e-162 577.0 374 74.3
AT4G17370 Arabidopsis thaliana HOM05D006567 ORTHO05D009430 3.0e-162 575.5 360 76.1
Nitab4.5_0001381g0120 Nicotiana tabacum HOM05D006567 ORTHO05D009430 3.9e-162 575.1 363 76.0
THA.LOC104806666 Tarenaya hassleriana HOM05D006567 ORTHO05D009430 8.7e-162 573.9 369 74.5
PSO170G1323 Papaver somniferum HOM05D006567 ORTHO05D009430 1.5e-161 573.2 379 74.1
AL7G37340 Arabidopsis lyrata HOM05D006567 ORTHO05D009430 9.7e-161 570.5 375 73.6
Sp7g16810 Schrenkiella parvula HOM05D006567 ORTHO05D009430 9.7e-161 570.5 360 75.6
BcaNung03466 Brassica carinata HOM05D006567 ORTHO05D009430 3.7e-160 568.5 368 73.4
A03p50390 Brassica napus HOM05D006567 ORTHO05D009430 6.3e-160 567.8 372 72.8
Aa31LG1G23140 Aethionema arabicum HOM05D006567 ORTHO05D009430 1.8e-159 566.2 367 73.0
BolC7t45378H Brassica oleracea HOM05D006567 ORTHO05D009430 9.1e-159 563.9 370 72.4
BraA03t14129Z Brassica rapa HOM05D006567 ORTHO05D009430 1.2e-158 563.5 360 73.9
HPP92_025881 Vanilla planifolia HOM05D006567 ORTHO05D009430 5.9e-158 561.2 366 74.3
Nitab4.5_0002289g0070 Nicotiana tabacum HOM05D006567 ORTHO05D009430 1.7e-157 559.7 362 74.6
SEGI_34288 Sequoiadendron giganteum HOM05D006567 ORTHO05D009430 1.1e-151 540.4 361 72.0
unitig_899.g15594 Utricularia gibba HOM05D006567 ORTHO05D009430 1.2e-150 537.0 376 69.7
AUR62007104 Chenopodium quinoa HOM05D006567 ORTHO05D009430 1.3e-149 533.5 352 73.0
CiPaw.11G081200 Carya illinoinensis HOM05D006567 ORTHO05D009430 5.5e-148 528.1 300 84.0
Os08g0148267 Oryza sativa ssp. japonica HOM05D006567 ORTHO05D009430 7.0e-143 511.1 303 81.2
Manes.01G082300 Manihot esculenta HOM05D006567 ORTHO05D009430 5.0e-141 505.0 284 84.9
AagrBONN_evm.TU.Sc2ySwM_228.3639 Anthoceros agrestis HOM05D006567 ORTHO05D009430 8.5e-141 504.2 365 65.8
Sed0022818 Sechium edule HOM05D006567 ORTHO05D009430 1.9e-140 503.1 276 87.0
Dinv39160 Davidia involucrata HOM05D006567 ORTHO05D009430 2.7e-139 499.2 284 83.5
Mapoly0040s0044 Marchantia polymorpha HOM05D006567 ORTHO05D009430 2.3e-138 496.1 363 66.1
Prupe.5G066000 Prunus persica HOM05D006567 ORTHO05D009430 7.5e-137 491.1 267 86.9
SMO228G0171 Selaginella moellendorffii HOM05D006567 ORTHO05D009430 4.1e-135 485.3 372 64.5
Pp3c4_15440 Physcomitrium patens HOM05D006567 ORTHO05D009430 4.7e-131 471.9 376 62.2
Zm00001eb416490 Zea mays HOM05D006567 ORTHO05D009430 1.9e-124 449.9 306 72.2
Lj2C221T14 Lonicera japonica HOM05D006567 ORTHO05D009430 1.0e-114 417.5 241 83.0
FvH4_5g19170 Fragaria vesca HOM05D006567 ORTHO05D009430 1.6e-110 403.7 231 81.0
GSVIVG01004725001 Vitis vinifera HOM05D006567 ORTHO05D009430 1.2e-107 394.0 227 82.4
Sc07g0009260 Simmondsia chinensis HOM05D006567 ORTHO05D009430 6.2e-107 391.7 224 79.9
Rhsim09G0000200 Rhododendron simsii HOM05D006567 ORTHO05D009430 2.3e-106 389.8 349 57.6
Glyma.17G143100 Glycine max HOM05D006567 ORTHO05D009430 3.4e-81 306.2 179 81.0
BcaC06g33541 Brassica carinata HOM05D006567 ORTHO05D009430 1.4e-66 257.7 212 61.8
QL08p052096 Quercus lobata HOM05D006567 ORTHO05D015939 6.9e-50 202.2 122 77.0
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 9.0e-50 201.8 132 72.0
FvH4_5g07380 Fragaria vesca HOM05D006567 ORTHO05D015939 3.8e-48 196.4 123 73.2
FAN04G0922 Fragaria x ananassa HOM05D006567 ORTHO05D015939 7.9e-46 188.7 123 70.7
FAN09G0929 Fragaria x ananassa HOM05D006567 ORTHO05D015939 2.3e-45 187.2 122 70.5
FAN22G0783 Fragaria x ananassa HOM05D006567 ORTHO05D015939 2.3e-45 187.2 122 70.5
FvH4_3g36620 Fragaria vesca HOM05D006567 ORTHO05D015939 8.8e-45 185.3 121 71.9
FAN27G0484 Fragaria x ananassa HOM05D006567 ORTHO05D015939 8.2e-43 178.7 123 68.3
Rhsim09G0000100 Rhododendron simsii HOM05D006567 ORTHO05D009430 2.5e-31 140.6 95 71.6
BcaC06g33542 Brassica carinata HOM05D006567 ORTHO05D015939 8.0e-30 135.6 114 57.0
FAN28G1973 Fragaria x ananassa HOM05D006567 ORTHO05D015939 5.7e-20 102.8 57 78.9
TPR.G2696 Trifolium pratense HOM05D006567 ORTHO05D411767 2.6e-12 77.4 54 68.5
TPR.G40300 Trifolium pratense HOM05D006567 ORTHO05D412752 5.7e-12 76.3 54 68.5
TPR.G24425 Trifolium pratense HOM05D006567 ORTHO05D411483 9.8e-12 75.5 54 66.7
TPR.G2679 Trifolium pratense HOM05D006567 ORTHO05D412848 3.1e-10 70.5 54 64.8
Pp3s96_60 Physcomitrium patens HOM05D016182 ORTHO05D028865 9.1e-10 68.9 257 25.7
AL7G37260 Arabidopsis lyrata HOM05D006567 ORTHO05D015939 1.6e-09 68.2 43 69.8
Ca_29050_v3 Cicer arietinum L. HOM05D006567 ORTHO05D018939 5.0e-08 63.2 282 26.2
EL10Ac4g09527 Beta vulgaris HOM05D006567 ORTHO05D010541 4.2e-07 60.1 34 79.4


User provided reference genes

Program Settings