Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 1.1e-84 316.6 158 100.0
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 9.7e-62 240.4 164 82.3
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 1.4e-60 236.5 158 79.7
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 1.0e-42 177.2 162 65.4
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 6.6e-18 94.7 158 41.8
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 5.6e-17 91.7 162 42.6
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 7.3e-17 91.3 158 38.0
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 7.3e-17 91.3 162 36.4
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.2e-16 90.5 155 40.6
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 2.1e-16 89.7 118 46.6
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 3.6e-16 89.0 118 45.8
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.7e-16 88.6 155 39.4
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 6.2e-16 88.2 163 38.0
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 6.2e-16 88.2 160 37.5
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 8.1e-16 87.8 136 40.4
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 8.1e-16 87.8 158 38.6
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 8.1e-16 87.8 158 38.0
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 1.4e-15 87.0 148 38.5
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.4e-15 87.0 155 40.0
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.8e-15 86.7 146 34.9
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.8e-15 86.7 162 37.7
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 2.3e-15 86.3 163 38.0
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 3.1e-15 85.9 146 34.2
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 4.0e-15 85.5 119 44.5
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 4.0e-15 85.5 158 35.4
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 1.2e-14 84.0 164 34.1
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 1.5e-14 83.6 168 35.1
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 2.0e-14 83.2 159 39.0
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 3.4e-14 82.4 132 46.2
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 4.4e-14 82.0 158 35.4
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 4.4e-14 82.0 158 36.7
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 5.8e-14 81.6 153 37.9
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 7.5e-14 81.3 129 38.8
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.3e-13 80.5 162 36.4
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 1.7e-13 80.1 119 42.9
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 1.7e-13 80.1 152 34.9
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 4.9e-13 78.6 121 41.3
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 4.9e-13 78.6 144 34.0
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 6.4e-13 78.2 160 32.5
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 1.4e-12 77.0 124 35.5
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 3.2e-12 75.9 149 36.9
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 9.2e-12 74.3 141 36.2
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 1.6e-11 73.6 145 36.6
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 2.1e-11 73.2 143 35.0
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 3.5e-11 72.4 165 33.9
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 4.6e-11 72.0 160 35.6
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 6.0e-11 71.6 133 34.6
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 7.8e-11 71.2 161 34.2
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 1.7e-10 70.1 158 34.2
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 1.7e-10 70.1 146 34.2
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 1.7e-10 70.1 120 35.8
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 2.3e-10 69.7 166 33.1
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 3.0e-10 69.3 161 34.8
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 8.6e-10 67.8 163 33.1
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 8.6e-10 67.8 147 33.3
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 8.6e-10 67.8 157 34.4
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 1.5e-09 67.0 163 31.3
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 1.9e-09 66.6 152 32.2
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 1.9e-09 66.6 119 34.5
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 3.3e-09 65.9 154 37.0
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 3.3e-09 65.9 128 33.6
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 4.3e-09 65.5 71 47.9
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 5.6e-09 65.1 154 33.8
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 5.6e-09 65.1 117 38.5
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 9.5e-09 64.3 113 35.4
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 9.5e-09 64.3 67 52.2
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 1.2e-08 63.9 164 32.3
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 1.6e-08 63.5 120 36.7
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 1.6e-08 63.5 120 36.7
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 2.8e-08 62.8 173 30.1
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 3.6e-08 62.4 67 50.7
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 3.6e-08 62.4 67 50.7
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 3.6e-08 62.4 67 50.7
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 4.7e-08 62.0 137 32.1
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 8.1e-08 61.2 114 41.2
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 8.1e-08 61.2 146 33.6
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 8.1e-08 61.2 117 37.6
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 8.1e-08 61.2 118 35.6
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 8.1e-08 61.2 145 33.8
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 1.1e-07 60.8 111 37.8
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 1.1e-07 60.8 155 36.1
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 1.1e-07 60.8 168 33.9
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 1.1e-07 60.8 105 34.3
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 1.4e-07 60.5 67 49.3
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.4e-07 60.5 139 34.5
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 1.8e-07 60.1 104 34.6
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 3.1e-07 59.3 137 37.2
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 3.1e-07 59.3 157 30.6
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 4.0e-07 58.9 98 33.7
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 6.8e-07 58.2 152 33.6
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 1.5e-06 57.0 37 70.3
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 5.8e-06 55.1 175 28.6


User provided reference genes

Program Settings