Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003312.2 Cucumis melo HOM05D007064 ORTHO05D008772 4.5e-203 711.1 364 100.0
CsaV3_3G050060 Cucumis sativus L. HOM05D007064 ORTHO05D008772 1.9e-193 679.1 363 95.6
ClCG09G013090 Citrullus lanatus HOM05D007064 ORTHO05D008772 7.9e-184 647.1 362 91.7
QL09p023233 Quercus lobata HOM05D007064 ORTHO05D008772 6.4e-141 504.6 332 76.5
Thecc.05G215700 Theobroma cacao HOM05D007064 ORTHO05D008772 1.2e-139 500.4 318 77.4
CiPaw.05G216200 Carya illinoinensis HOM05D007064 ORTHO05D008772 2.0e-139 499.6 339 73.2
Haze_00398 Corylus avellana HOM05D007064 ORTHO05D008772 2.0e-139 499.6 347 73.5
GSVIVG01024376001 Vitis vinifera HOM05D007064 ORTHO05D008772 8.6e-138 494.2 340 73.2
Duzib106G1646 Durio zibethinus HOM05D007064 ORTHO05D008772 6.2e-136 488.0 375 68.5
CSS0020222 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 8.0e-136 487.6 332 72.6
Gohir.A11G303500 Gossypium hirsutum HOM05D007064 ORTHO05D008772 4.0e-135 485.3 360 69.2
CSS0020425 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 5.2e-135 485.0 332 72.3
COL.COLO4_15235 Corchorus olitorius HOM05D007064 ORTHO05D008772 5.2e-135 485.0 327 74.9
Gorai.007G348800 Gossypium raimondii HOM05D007064 ORTHO05D008772 1.2e-134 483.8 360 68.9
Nn1g00178 Nelumbo nucifera HOM05D007064 ORTHO05D008772 1.5e-134 483.4 364 69.0
Rhsim03G0222700 Rhododendron simsii HOM05D007064 ORTHO05D008772 2.0e-134 483.0 338 71.6
Cfa016048 Carpinus fangiana HOM05D007064 ORTHO05D008772 2.6e-134 482.6 347 72.3
CANSAT78G1989 Cannabis sativa HOM05D007064 ORTHO05D008772 7.5e-134 481.1 319 73.7
Prupe.1G025200 Prunus persica HOM05D007064 ORTHO05D008772 6.4e-133 478.0 323 73.7
TWI60G0820 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 1.1e-132 477.2 348 69.0
RcHm_v2.0_Chr4g0388921 Rosa chinensis HOM05D007064 ORTHO05D008772 7.0e-132 474.6 334 72.8
Dinv17250 Davidia involucrata HOM05D007064 ORTHO05D008772 1.6e-131 473.4 320 73.8
Ciclev10020357m.g Citrus clementina HOM05D007064 ORTHO05D008772 4.6e-131 471.9 337 72.4
TWI60G1094 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 4.6e-131 471.9 330 71.2
FvH4_4g01950 Fragaria vesca HOM05D007064 ORTHO05D008772 2.3e-130 469.5 325 73.8
MD13G1202900 Malus domestica HOM05D007064 ORTHO05D008772 3.0e-130 469.2 336 72.3
Sp6g27320 Schrenkiella parvula HOM05D007064 ORTHO05D008772 3.9e-130 468.8 332 70.8
TAR629G0708 Trochodendron aralioides HOM05D007064 ORTHO05D008772 5.1e-130 468.4 319 72.7
FAN12G0288 Fragaria x ananassa HOM05D007064 ORTHO05D008772 6.6e-130 468.0 325 73.5
PSO063G1297 Papaver somniferum HOM05D007064 ORTHO05D008772 7.3e-129 464.5 358 66.5
AL6G27830 Arabidopsis lyrata HOM05D007064 ORTHO05D008772 1.2e-128 463.8 332 69.9
Lj1A1033T73 Lonicera japonica HOM05D007064 ORTHO05D008772 1.6e-128 463.4 333 70.3
AT5G16810 Arabidopsis thaliana HOM05D007064 ORTHO05D008772 2.1e-128 463.0 332 70.2
Nitab4.5_0000021g0660 Nicotiana tabacum HOM05D007064 ORTHO05D008772 2.1e-128 463.0 358 67.3
Atru.chr12.1880 Acer truncatum HOM05D007064 ORTHO05D008772 6.2e-128 461.5 344 69.5
Thhalv10013656m.g Eutrema salsugineum HOM05D007064 ORTHO05D008772 1.1e-127 460.7 332 69.6
THA.LOC104820893 Tarenaya hassleriana HOM05D007064 ORTHO05D008772 1.8e-127 459.9 352 67.6
Phvul.002G040600 Phaseolus vulgaris HOM05D007064 ORTHO05D008772 3.1e-127 459.1 335 69.0
CAN.G1131.22 Capsicum annuum HOM05D007064 ORTHO05D008772 1.2e-126 457.2 316 71.5
PGSC0003DMG400003147 Solanum tuberosum HOM05D007064 ORTHO05D008772 1.2e-126 457.2 356 67.4
Solyc03g097130.3 Solanum lycopersicum HOM05D007064 ORTHO05D008772 2.0e-126 456.4 358 67.3
Sc19g0000100 Simmondsia chinensis HOM05D007064 ORTHO05D008772 2.6e-126 456.1 319 71.2
Sabra19G0062000 Salix brachista HOM05D007064 ORTHO05D008772 3.4e-126 455.7 347 67.7
Glyma.11G009700 Glycine max HOM05D007064 ORTHO05D008772 9.9e-126 454.1 320 70.0
PSO782G0881 Papaver somniferum HOM05D007064 ORTHO05D008772 9.9e-126 454.1 349 66.5
VMungo1215G2591 Vigna mungo HOM05D007064 ORTHO05D008772 9.9e-126 454.1 357 65.0
Nitab4.5_0004530g0030 Nicotiana tabacum HOM05D007064 ORTHO05D008772 1.7e-125 453.4 356 66.0
arahy.Tifrunner.gnm1.ann1.P291P9 Arachis hypogaea HOM05D007064 ORTHO05D008772 2.2e-125 453.0 358 68.2
BolC2t06775H Brassica oleracea HOM05D007064 ORTHO05D008772 2.2e-125 453.0 324 69.8
Lsat_1_v5_gn_2_95061 Lactuca sativa HOM05D007064 ORTHO05D008772 3.7e-125 452.2 321 70.4
BcaC03g18516 Brassica carinata HOM05D007064 ORTHO05D008772 4.9e-125 451.8 324 69.4
C02p08600 Brassica napus HOM05D007064 ORTHO05D008772 4.9e-125 451.8 324 69.4
arahy.Tifrunner.gnm1.ann1.EDBW82 Arachis hypogaea HOM05D007064 ORTHO05D008772 1.4e-124 450.3 358 67.9
Migut.F00087 Erythranthe guttata HOM05D007064 ORTHO05D008772 2.4e-124 449.5 320 69.1
Actinidia34318 Actinidia chinensis HOM05D007064 ORTHO05D008772 5.4e-124 448.4 321 69.8
Aqoxy3G02225 Aquilegia oxysepala HOM05D007064 ORTHO05D008772 1.7e-122 443.4 355 63.1
Ah.04g156400 Amaranthus hybridus HOM05D007064 ORTHO05D008772 6.6e-122 441.4 317 67.2
HanXRQChr14g0451581 Helianthus annuus HOM05D007064 ORTHO05D008772 8.6e-122 441.0 356 64.0
vmacro06523 Vaccinium macrocarpon HOM05D007064 ORTHO05D008772 2.5e-121 439.5 442 55.2
Sed0013285 Sechium edule HOM05D007064 ORTHO05D008772 4.3e-121 438.7 238 91.6
Hund09801 Selenicereus undatus HOM05D007064 ORTHO05D000105 4.3e-121 438.7 316 69.0
EL10Ac3g05060 Beta vulgaris HOM05D007064 ORTHO05D008772 5.6e-121 438.3 319 67.7
ECA238G0775 Erigeron canadensis HOM05D007064 ORTHO05D008772 7.3e-121 438.0 348 64.9
BcaNung04953 Brassica carinata HOM05D007064 ORTHO05D008772 2.8e-120 436.0 332 66.9
Cc02_g00210 Coffea canephora HOM05D007064 ORTHO05D008772 3.6e-120 435.6 338 64.5
SGA_v2.0_scaffold44G16901 Striga asiatica HOM05D007064 ORTHO05D008772 1.8e-119 433.3 356 62.6
BraA02t05344Z Brassica rapa HOM05D007064 ORTHO05D008772 2.4e-119 433.0 337 65.6
Potri.019G050500 Populus trichocarpa HOM05D007064 ORTHO05D008772 2.4e-119 433.0 339 67.8
Gohir.D11G318800 Gossypium hirsutum HOM05D007064 ORTHO05D008772 5.2e-119 431.8 289 73.0
AUR62028195 Chenopodium quinoa HOM05D007064 ORTHO05D008772 2.0e-118 429.9 317 65.9
A02p03790 Brassica napus HOM05D007064 ORTHO05D008772 7.6e-118 427.9 318 67.9
Lalb_Chr09g0320151 Lupinus albus HOM05D007064 ORTHO05D008772 9.9e-118 427.6 352 64.2
Manes.09G127400 Manihot esculenta HOM05D007064 ORTHO05D008772 2.2e-117 426.4 357 65.3
Aa31LG11G12770 Aethionema arabicum HOM05D007064 ORTHO05D008772 3.5e-115 419.1 359 61.6
LjContig00222g0020502 Lotus japonicus HOM05D007064 ORTHO05D008772 4.6e-115 418.7 360 63.1
ATR0829G191 Amborella trichopoda HOM05D007064 ORTHO05D008772 1.3e-112 410.6 336 61.3
Psat2g189080 Pisum sativum HOM05D007064 ORTHO05D008772 6.2e-112 408.3 324 67.6
Medtr5g006230 Medicago truncatula HOM05D007064 ORTHO05D008772 8.1e-112 407.9 312 69.6
AUR62002078 Chenopodium quinoa HOM05D007064 ORTHO05D008772 2.6e-110 402.9 301 65.8
SalBow4G1574 Salvia bowleyana HOM05D007064 ORTHO05D008772 4.4e-110 402.1 360 58.6
Ca_24438_v3 Cicer arietinum L. HOM05D007064 ORTHO05D008772 9.9e-110 401.0 316 66.5
TPR.G37970 Trifolium pratense HOM05D007064 ORTHO05D008772 1.3e-109 400.6 341 63.6
SalBow4G1678 Salvia bowleyana HOM05D007064 ORTHO05D008772 1.4e-108 397.1 366 57.9
Zm00001eb187800 Zea mays HOM05D007064 ORTHO05D008772 1.3e-106 390.6 338 59.5
Os02g0694800 Oryza sativa ssp. japonica HOM05D007064 ORTHO05D008772 5.1e-106 388.7 337 59.6
CARHR196350 Cardamine hirsuta HOM05D007064 ORTHO05D008772 6.6e-106 388.3 289 66.4
HPP92_025673 Vanilla planifolia HOM05D007064 ORTHO05D008772 4.5e-102 375.6 325 60.3
Peaxi162Scf00516g00675 Petunia axillaris HOM05D007064 ORTHO05D008772 6.4e-101 371.7 338 60.1
CDE11G0292 Ceratophyllum demersum HOM05D007064 ORTHO05D008772 4.2e-100 369.0 317 59.3
SEGI_11081 Sequoiadendron giganteum HOM05D007064 ORTHO05D008772 4.5e-94 349.0 338 54.4
Hma1.2p1_0649F.1_g195260 Hydrangea macrophylla HOM05D007064 ORTHO05D008772 7.9e-91 338.2 227 73.6
Sopen03g027870 Solanum pennellii HOM05D007064 ORTHO05D008772 3.4e-86 322.8 227 71.8
Carub.0006s1503 Capsella rubella HOM05D007064 ORTHO05D008772 1.9e-81 307.0 226 69.0
Eucgr.K00080 Eucalyptus grandis HOM05D007064 ORTHO05D008772 4.1e-79 299.3 215 67.9
Oeu038089.3 Olea europaea HOM05D007064 ORTHO05D008772 1.0e-77 294.7 364 46.4
Pp3c23_10770 Physcomitrium patens HOM05D007064 ORTHO05D008772 1.0e-77 294.7 381 44.6
Mapoly0096s0061 Marchantia polymorpha HOM05D007064 ORTHO05D008772 1.8e-74 283.9 385 42.6
Glyma.01G233100 Glycine max HOM05D007064 ORTHO05D008772 1.1e-73 281.2 267 57.3
AagrBONN_evm.TU.Sc2ySwM_344.2887 Anthoceros agrestis HOM05D007064 ORTHO05D008772 2.6e-65 253.4 324 44.1
Cpa.g.sc43.97 Carica papaya HOM05D007064 ORTHO05D008772 6.8e-50 202.2 130 76.9
SMO343G0012 Selaginella moellendorffii HOM05D007064 ORTHO05D008772 1.2e-38 164.9 301 35.9
CBR_g8900 Chara braunii HOM05D007064 ORTHO05D000002 8.0e-35 152.1 210 41.0
Oeu043948.1 Olea europaea HOM05D007064 ORTHO05D008772 1.6e-27 127.9 80 76.2
CBR_g8898 Chara braunii HOM05D007064 ORTHO05D008772 3.6e-19 100.1 75 61.3
Psat0s4094g0040 Pisum sativum HOM05D007064 ORTHO05D008772 1.2e-14 85.1 52 80.8
HanXRQChr01g0005821 Helianthus annuus HOM05D007064 ORTHO05D008772 4.3e-12 76.6 70 48.6
PRCOL_00004348 Prasinoderma coloniale HOM05D007064 ORTHO05D008772 8.9e-10 68.9 248 26.2


User provided reference genes

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