Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 3.8e-194 681.4 361 100.0
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 1.8e-132 476.5 331 79.8
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 6.2e-96 355.1 362 59.7
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 2.4e-92 343.2 360 59.2
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 2.3e-90 336.7 351 59.8
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 1.2e-86 324.3 332 58.7
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 1.1e-84 317.8 318 60.7
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 4.2e-84 315.8 371 53.6
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 5.4e-84 315.5 352 56.8
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 7.1e-84 315.1 394 52.8
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 3.9e-82 309.3 332 60.2
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.9e-82 309.3 332 60.2
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 5.1e-82 308.9 341 58.4
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 6.6e-82 308.5 364 54.9
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 1.1e-81 307.8 314 59.2
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 2.5e-81 306.6 366 54.4
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 3.3e-81 306.2 338 58.0
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 2.8e-80 303.1 335 57.6
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 2.8e-80 303.1 304 62.2
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 3.6e-80 302.8 335 56.7
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 2.4e-79 300.1 315 58.1
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.5e-78 297.4 328 57.3
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 2.6e-78 296.6 303 60.1
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 9.9e-78 294.7 339 57.8
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 2.2e-77 293.5 324 57.7
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 6.4e-77 292.0 365 53.4
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 6.4e-77 292.0 359 53.8
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 8.4e-77 291.6 320 57.2
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 8.4e-77 291.6 342 54.7
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.4e-76 290.8 321 58.6
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 1.6e-75 287.3 324 56.5
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 2.3e-74 283.5 331 55.0
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 3.9e-74 282.7 296 59.8
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.9e-73 280.4 338 53.3
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 9.6e-73 278.1 358 53.4
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 2.8e-72 276.6 336 54.8
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 2.8e-72 276.6 328 54.6
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.8e-72 276.6 356 52.8
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 3.1e-71 273.1 386 52.1
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 4.0e-71 272.7 337 54.9
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 4.0e-71 272.7 263 60.8
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 4.5e-70 269.2 318 56.6
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 4.9e-69 265.8 234 67.5
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 6.4e-69 265.4 368 47.8
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.4e-68 264.2 349 53.6
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 1.6e-67 260.8 335 51.0
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.6e-67 260.8 353 49.0
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 3.5e-67 259.6 343 51.0
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 7.9e-67 258.5 336 50.0
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 1.0e-66 258.1 341 51.3
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 1.0e-66 258.1 328 55.8
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 6.7e-66 255.4 349 53.0
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 1.9e-65 253.8 347 49.0
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 4.3e-65 252.7 358 48.0
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 4.3e-65 252.7 335 49.3
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 9.6e-65 251.5 364 48.9
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.3e-64 251.1 368 50.5
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 1.6e-64 250.8 199 65.3
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 2.8e-64 250.0 192 71.4
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 2.8e-64 250.0 204 67.6
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 6.2e-64 248.8 174 71.3
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 1.1e-63 248.1 174 70.7
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 1.1e-63 248.1 174 70.7
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 1.1e-63 248.1 174 70.7
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.8e-63 247.3 307 55.0
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 6.9e-63 245.4 188 67.6
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 6.9e-63 245.4 325 48.6
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 6.9e-63 245.4 397 45.6
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 9.0e-63 245.0 390 46.7
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.2e-62 244.6 339 49.3
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 1.5e-62 244.2 309 51.1
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 2.0e-62 243.8 168 72.0
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 3.4e-62 243.0 172 73.8
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 3.4e-62 243.0 186 73.1
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 1.0e-61 241.5 238 58.0
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 6.5e-61 238.8 188 71.3
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 8.4e-61 238.4 325 47.4
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 7.1e-60 235.3 286 54.9
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 7.1e-60 235.3 186 70.4
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 1.2e-59 234.6 267 58.1
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 6.0e-59 232.3 174 73.6
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 6.0e-59 232.3 313 53.0
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 7.9e-59 231.9 282 54.3
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 6.7e-58 228.8 178 69.1
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 6.7e-58 228.8 177 66.7
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 1.9e-57 227.3 177 66.7
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 2.5e-57 226.9 321 51.7
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 1.3e-56 224.6 332 44.3
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 6.3e-56 222.2 175 70.3
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 1.4e-55 221.1 263 53.2
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 5.3e-55 219.2 168 69.6
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 5.3e-55 219.2 216 61.1
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 6.9e-55 218.8 161 70.2
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.3e-53 214.5 179 65.9
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 3.8e-53 213.0 314 43.9
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 2.7e-51 206.8 313 45.4
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 6.1e-51 205.7 339 46.0
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 1.6e-48 197.6 168 63.1
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.6e-46 190.3 148 69.6
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.6e-46 190.3 148 69.6
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 5.5e-44 182.6 168 58.9
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 9.4e-44 181.8 248 52.8
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 1.2e-43 181.4 339 42.2
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 1.6e-43 181.0 262 45.8
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 2.0e-41 174.1 124 70.2
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 4.2e-36 156.4 104 74.0
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 7.9e-35 152.1 124 66.1
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 3.0e-34 150.2 119 70.6
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 4.2e-28 129.8 202 40.1
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 1.6e-27 127.9 171 43.3
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 8.0e-27 125.6 140 56.4
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 5.7e-25 119.4 173 48.6
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 4.5e-22 109.8 63 88.9
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 1.3e-21 108.2 71 77.5
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 3.8e-21 106.7 230 43.9
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 6.5e-21 105.9 106 60.4
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 6.1e-19 99.4 246 38.6
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 9.1e-15 85.5 73 65.8
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 4.5e-14 83.2 151 42.4
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 7.7e-14 82.4 130 51.5
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 8.6e-13 79.0 85 49.4
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.2e-12 77.0 40 87.5
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 7.2e-12 75.9 137 41.6
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.2e-11 75.1 39 87.2
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 1.4e-07 61.6 66 51.5
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 3.5e-06 57.0 68 51.5


User provided reference genes

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