Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.0e-134 483.4 242 100.0
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 1.3e-97 360.1 351 58.7
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 9.6e-93 344.0 350 56.6
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 4.4e-90 335.1 352 53.4
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.3e-89 333.6 350 54.6
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.9e-89 332.4 350 54.9
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 1.6e-87 326.6 352 52.3
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 9.6e-85 317.4 352 50.9
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 8.1e-84 314.3 352 50.3
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 2.4e-83 312.8 352 50.0
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 9.0e-83 310.8 350 49.7
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 1.5e-82 310.1 243 62.6
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 1.5e-82 310.1 349 49.6
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 2.0e-82 309.7 352 49.7
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 2.6e-82 309.3 348 50.9
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 4.4e-82 308.5 350 50.6
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 5.8e-82 308.1 349 49.9
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 5.8e-82 308.1 364 49.2
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 5.8e-82 308.1 349 49.9
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 7.6e-82 307.8 352 50.0
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 1.7e-81 306.6 350 50.9
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 3.8e-81 305.4 352 49.7
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 4.9e-81 305.1 349 49.0
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 6.4e-81 304.7 352 48.6
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 8.4e-81 304.3 352 49.1
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 1.4e-80 303.5 351 48.7
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.9e-80 303.1 349 49.0
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 3.2e-80 302.4 351 48.7
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 2.1e-79 299.7 346 48.3
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.7e-79 299.3 349 48.4
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 6.0e-79 298.1 351 48.1
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 6.0e-79 298.1 351 48.1
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 1.0e-78 297.4 349 48.4
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 1.3e-78 297.0 352 46.9
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 1.7e-78 296.6 350 47.4
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 5.1e-78 295.0 351 47.6
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 6.6e-78 294.7 348 46.8
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 8.7e-78 294.3 350 47.4
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 8.7e-78 294.3 351 47.6
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 1.1e-77 293.9 349 48.1
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 1.5e-77 293.5 347 47.6
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 1.5e-77 293.5 347 47.3
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 2.5e-77 292.7 350 46.9
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 3.3e-77 292.4 351 47.0
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 5.6e-77 291.6 351 47.0
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 1.3e-76 290.4 350 46.9
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.6e-76 290.0 366 45.1
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 1.6e-76 290.0 352 47.2
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 1.6e-76 290.0 349 47.6
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 2.1e-76 289.7 350 46.6
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 2.8e-76 289.3 350 46.9
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 2.8e-76 289.3 349 47.3
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 2.8e-76 289.3 350 46.6
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 4.8e-76 288.5 350 46.0
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 4.8e-76 288.5 351 47.3
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 8.1e-76 287.7 347 46.1
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 1.8e-75 286.6 350 46.3
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 4.0e-75 285.4 347 46.7
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 9.0e-75 284.3 351 46.7
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 2.0e-74 283.1 350 45.4
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 2.0e-74 283.1 342 47.7
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 2.6e-74 282.7 341 48.7
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 2.6e-74 282.7 347 47.3
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 2.6e-74 282.7 352 45.5
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 4.5e-74 282.0 342 47.7
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 9.9e-74 280.8 348 46.8
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 2.9e-73 279.3 351 45.9
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 1.4e-72 276.9 343 46.9
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 1.9e-72 276.6 348 46.0
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 4.2e-72 275.4 328 48.8
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 4.2e-72 275.4 354 46.0
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 7.9e-71 271.2 374 43.3
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 7.9e-71 271.2 308 50.6
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 3.0e-70 269.2 360 46.4
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 1.5e-69 266.9 347 43.5
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 2.1e-68 263.1 165 80.0
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 1.4e-67 260.4 353 43.6
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 1.8e-67 260.0 379 41.7
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 4.9e-65 251.9 396 40.2
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 1.4e-64 250.4 352 41.8
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 1.9e-64 250.0 345 42.6
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 5.5e-64 248.4 411 39.4
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 4.6e-63 245.4 351 40.2
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 6.0e-63 245.0 161 75.8
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 4.3e-61 238.8 349 41.0
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.3e-60 237.3 348 39.9
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 2.8e-60 236.1 304 44.7
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 2.4e-59 233.0 167 67.7
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 3.1e-59 232.6 161 70.8
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 5.3e-59 231.9 159 70.4
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 5.3e-59 231.9 168 69.6
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 4.5e-58 228.8 296 45.3
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 3.3e-53 212.6 253 47.8
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 1.1e-51 207.6 341 37.8
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.1e-51 207.6 351 35.9
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 1.4e-51 207.2 155 62.6
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 1.8e-51 206.8 346 35.0
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 5.0e-49 198.7 309 44.0
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 1.0e-46 191.0 244 43.0
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 7.4e-45 184.9 267 40.8
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 1.7e-44 183.7 253 41.5
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 4.1e-43 179.1 133 68.4
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 1.3e-41 174.1 252 39.7
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.8e-36 156.4 182 44.5
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 3.1e-35 152.9 304 34.2
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.6e-34 150.6 298 37.9
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 1.0e-33 147.9 89 85.4
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.6e-26 124.0 94 68.1
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 2.2e-25 120.2 192 34.4
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 8.0e-23 111.7 83 67.5
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 1.0e-22 111.3 82 68.3
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 1.0e-22 111.3 103 56.3
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 1.8e-22 110.5 82 67.1
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 3.4e-21 106.3 97 53.6
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 1.8e-19 100.5 91 54.9
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 3.5e-18 96.3 201 33.8
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 1.5e-16 90.9 78 59.0
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 5.7e-13 79.0 82 48.8
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 4.9e-12 75.9 75 52.0
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 1.3e-09 67.8 54 64.8
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 2.9e-09 66.6 38 84.2


User provided reference genes

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