Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 2.7e-88 328.9 206 100.0
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 5.9e-67 258.1 208 75.5
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 2.3e-63 246.1 214 76.6
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.1e-49 200.7 206 61.2
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 3.6e-48 195.7 208 65.4
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 2.3e-47 193.0 205 56.1
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 8.8e-47 191.0 207 58.9
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.5e-46 190.3 206 56.8
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 2.6e-46 189.5 208 60.6
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 2.2e-45 186.4 206 59.2
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 2.7e-43 179.5 205 51.2
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 5.9e-43 178.3 206 57.3
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 7.7e-43 177.9 205 50.2
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 2.2e-42 176.4 205 53.7
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 8.5e-42 174.5 226 56.6
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 8.5e-42 174.5 211 55.5
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.2e-40 170.6 210 55.7
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.2e-40 170.6 210 55.7
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 6.1e-40 168.3 211 60.2
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 1.0e-39 167.5 171 63.7
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 3.0e-39 166.0 206 51.5
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 5.2e-39 165.2 208 54.3
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.5e-38 163.7 207 50.2
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.6e-38 162.9 206 51.5
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.4e-38 162.5 211 58.3
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 3.4e-38 162.5 206 49.5
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 1.7e-37 160.2 211 57.8
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 2.2e-37 159.8 208 50.0
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.7e-37 159.1 205 50.7
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 4.8e-37 158.7 207 54.1
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.4e-36 157.1 205 47.3
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.4e-36 157.1 212 58.0
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.8e-36 156.8 222 55.9
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.1e-36 156.0 213 57.3
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.1e-36 156.0 214 54.2
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 7.0e-36 154.8 207 51.2
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 7.0e-36 154.8 229 49.3
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 2.0e-35 153.3 206 47.6
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.3e-34 150.6 206 51.5
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 2.9e-34 149.4 204 48.5
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.9e-34 149.4 210 48.6
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.0e-34 148.7 207 51.2
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.3e-33 146.0 213 49.3
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 4.2e-33 145.6 208 52.4
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 9.5e-33 144.4 212 44.8
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 2.1e-32 143.3 216 47.7
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 2.1e-32 143.3 207 47.3
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 6.1e-32 141.7 213 50.2
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.4e-31 140.6 208 51.4
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.8e-31 140.2 208 53.8
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.3e-31 139.8 222 52.3
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 2.3e-31 139.8 217 45.6
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 2.3e-31 139.8 207 44.0
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 4.0e-31 139.0 207 46.9
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 5.2e-31 138.7 209 46.9
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.7e-30 135.2 172 53.5
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 7.5e-30 134.8 206 47.6
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 9.8e-30 134.4 207 47.3
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.7e-29 133.7 209 48.8
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 2.2e-29 133.3 177 61.6
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 2.8e-29 132.9 206 45.6
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.7e-29 132.5 214 50.0
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.9e-29 132.1 208 50.5
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 4.9e-29 132.1 208 49.5
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.3e-29 131.7 182 53.8
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.1e-28 131.0 207 50.2
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.8e-28 130.2 219 46.6
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.1e-28 129.0 214 48.1
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 9.2e-28 127.9 206 47.1
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.7e-27 126.3 209 46.9
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 4.5e-27 125.6 222 47.7
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 5.9e-27 125.2 213 48.8
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 7.8e-27 124.8 214 47.7
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.3e-26 124.0 212 42.5
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.7e-26 123.6 217 43.8
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.9e-26 122.9 217 43.3
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.8e-26 122.5 220 44.5
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.0e-26 122.1 215 47.4
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.5e-25 120.6 216 50.9
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.5e-25 119.8 219 42.5
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 4.3e-25 119.0 205 43.9
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 9.5e-25 117.9 149 55.0
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.2e-24 117.5 216 46.3
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.1e-24 116.7 226 43.8
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.1e-24 116.7 170 48.8
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 2.8e-24 116.3 146 52.7
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 3.6e-24 115.9 214 39.3
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 3.6e-24 115.9 214 39.3
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 8.0e-24 114.8 214 39.7
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 8.0e-24 114.8 216 40.7
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 8.0e-24 114.8 216 40.7
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 8.0e-24 114.8 213 43.2
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-23 113.2 212 41.0
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 2.3e-23 113.2 212 41.0
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 2.3e-23 113.2 212 41.0
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 2.3e-23 113.2 168 54.2
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 3.0e-23 112.8 216 40.3
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 5.2e-23 112.1 218 45.0
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 6.8e-23 111.7 214 38.3
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 6.8e-23 111.7 214 38.3
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 6.8e-23 111.7 206 45.1
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 8.9e-23 111.3 211 39.8
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.6e-22 109.8 222 42.3
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 3.4e-22 109.4 216 40.3
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 4.4e-22 109.0 220 47.3
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 7.5e-22 108.2 116 53.4
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 1.7e-21 107.1 217 39.2
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.2e-21 106.7 207 44.9
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 6.4e-21 105.1 208 45.7
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 3.2e-20 102.8 212 40.1
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 5.4e-20 102.1 137 49.6
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 1.6e-19 100.5 175 42.3
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 1.6e-19 100.5 177 47.5
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.0e-19 100.1 206 45.6
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 2.0e-19 100.1 182 39.6
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 2.0e-19 100.1 183 40.4
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.0e-19 100.1 207 39.6
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 2.7e-19 99.8 176 38.6
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 4.6e-19 99.0 175 43.4
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 7.8e-19 98.2 175 42.3
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 7.8e-19 98.2 207 40.1
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-18 97.8 176 38.6
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.3e-18 97.4 179 45.3
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.3e-18 97.4 212 37.7
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 3.0e-18 96.3 175 42.3
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 3.9e-18 95.9 146 42.5
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 3.9e-18 95.9 159 45.3
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 8.6e-18 94.7 184 40.2
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.1e-17 94.4 216 42.1
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.1e-17 94.4 172 50.0
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 1.1e-17 94.4 177 42.9
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 1.1e-17 94.4 177 42.9
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 7.3e-17 91.7 202 33.7
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 7.3e-17 91.7 213 39.9
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 3.6e-16 89.4 213 39.4
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.4e-15 87.4 168 42.9
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.3e-15 86.7 215 39.1
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 3.1e-15 86.3 215 37.2
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 8.9e-15 84.7 149 43.0
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.0e-14 83.6 208 34.1
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 9.8e-14 81.3 121 46.3
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 9.8e-14 81.3 208 33.2
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.2e-13 80.1 200 36.0
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 3.7e-13 79.3 123 46.3
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 3.7e-13 79.3 123 48.8
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.7e-13 79.3 213 40.8
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 4.9e-13 79.0 216 34.3
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 6.4e-13 78.6 145 42.8
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.1e-12 77.8 211 35.5
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-12 77.4 120 45.8
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.9e-12 77.0 215 40.0
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 3.2e-12 76.3 209 35.4
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 3.2e-12 76.3 176 36.4
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 7.0e-12 75.1 210 42.9
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 1.6e-11 73.9 202 33.7
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 2.0e-11 73.6 152 40.8
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.5e-11 72.8 207 32.9
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.0e-10 71.2 174 36.2
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 2.3e-10 70.1 135 46.7
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 3.9e-10 69.3 156 39.1
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 8.6e-10 68.2 59 64.4
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 2.1e-08 63.5 185 34.6
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 3.6e-08 62.8 59 74.6
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 4.7e-08 62.4 129 38.0
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 4.7e-08 62.4 152 37.5
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 4.7e-08 62.4 186 33.9
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 8.1e-08 61.6 43 69.8
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 4.0e-07 59.3 122 41.0
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 1.5e-06 57.4 127 36.2
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 2.6e-06 56.6 186 30.6
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 3.4e-06 56.2 67 52.2
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 7.5e-06 55.1 206 35.4


User provided reference genes

Program Settings