Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 3.0e-108 395.2 201 100.0
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 2.2e-98 362.5 200 93.0
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 2.8e-98 362.1 201 91.0
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 7.4e-91 337.4 200 85.0
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 6.5e-87 324.3 201 82.6
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.9e-86 322.8 200 82.0
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.5e-86 321.2 200 82.0
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 1.2e-85 320.1 203 81.3
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.2e-85 320.1 200 81.5
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.2e-85 320.1 200 81.5
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 1.6e-85 319.7 200 82.5
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 3.6e-85 318.5 200 82.0
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 3.6e-85 318.5 200 82.0
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 6.1e-85 317.8 190 84.2
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 6.1e-85 317.8 200 81.0
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 8.0e-85 317.4 198 82.8
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 8.0e-85 317.4 200 81.5
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 1.0e-84 317.0 204 81.4
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 3.0e-84 315.5 202 81.7
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 5.2e-84 314.7 201 79.1
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 2.6e-83 312.4 196 82.7
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 7.4e-83 310.8 191 84.3
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 1.3e-82 310.1 201 79.6
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 1.7e-82 309.7 200 80.0
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 2.2e-82 309.3 201 77.6
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 2.2e-82 309.3 202 77.7
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 3.7e-82 308.5 201 77.6
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 6.3e-82 307.8 199 81.9
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 8.2e-82 307.4 197 81.2
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 8.2e-82 307.4 204 77.9
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 1.1e-81 307.0 204 80.4
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 1.8e-81 306.2 200 78.0
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 1.8e-81 306.2 200 79.5
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 2.4e-81 305.8 200 76.5
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 3.1e-81 305.4 205 77.1
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 5.3e-81 304.7 201 77.6
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 7.0e-81 304.3 200 78.5
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 7.0e-81 304.3 202 76.2
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 9.1e-81 303.9 203 77.3
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 1.6e-80 303.1 199 78.9
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 1.6e-80 303.1 188 84.0
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.0e-80 302.8 221 73.8
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 1.0e-79 300.4 189 83.1
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 1.3e-79 300.1 200 79.0
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 1.7e-79 299.7 201 77.1
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 2.9e-79 298.9 202 78.2
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 2.9e-79 298.9 202 77.7
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 3.8e-79 298.5 186 83.3
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 8.5e-79 297.4 190 78.9
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 1.1e-78 297.0 197 77.2
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 1.5e-78 296.6 201 77.1
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 2.5e-78 295.8 204 77.0
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 5.5e-78 294.7 198 77.3
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 5.5e-78 294.7 186 81.2
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 1.2e-77 293.5 202 76.2
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 2.1e-77 292.7 194 77.3
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 3.6e-77 292.0 199 76.9
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 6.1e-77 291.2 194 76.3
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 1.0e-76 290.4 200 76.0
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 1.0e-76 290.4 191 76.4
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 1.0e-76 290.4 196 76.5
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 1.0e-76 290.4 206 76.2
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 6.7e-76 287.7 197 75.6
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 1.2e-75 287.0 197 74.6
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.5e-75 286.6 203 72.9
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.5e-75 286.6 203 72.9
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 2.6e-75 285.8 191 75.4
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 2.6e-75 285.8 197 74.1
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 3.3e-75 285.4 198 74.2
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 5.7e-75 284.6 201 72.6
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 9.7e-75 283.9 201 73.1
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 1.7e-74 283.1 197 74.1
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 2.8e-74 282.3 201 72.1
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 4.8e-74 281.6 201 71.6
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 1.1e-73 280.4 191 77.5
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 1.1e-73 280.4 195 74.4
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 3.1e-73 278.9 200 73.5
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 3.1e-73 278.9 199 69.8
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 4.1e-73 278.5 201 70.1
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 7.0e-73 277.7 201 70.6
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 7.0e-73 277.7 201 70.6
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 7.0e-73 277.7 201 70.6
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 9.1e-73 277.3 201 70.1
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 1.6e-72 276.6 226 67.3
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 2.7e-72 275.8 195 73.3
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.5e-72 275.4 201 72.6
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 3.5e-72 275.4 201 69.7
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 3.5e-72 275.4 201 70.6
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 4.5e-72 275.0 201 71.6
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 5.9e-72 274.6 225 65.8
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 5.9e-72 274.6 168 82.1
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 1.7e-71 273.1 188 74.5
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 3.2e-70 268.9 197 69.5
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 2.7e-69 265.8 311 50.5
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 1.5e-67 260.0 240 59.6
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 2.0e-67 259.6 187 71.7
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 7.5e-67 257.7 188 70.7
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 9.5e-62 240.7 161 77.0
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 2.1e-61 239.6 199 63.8
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 3.0e-60 235.7 167 73.7
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 7.0e-57 224.6 155 74.2
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 8.0e-53 211.1 116 91.4
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 1.2e-51 207.2 132 80.3
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.9e-49 199.9 134 75.4
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 4.1e-49 198.7 134 77.6
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 2.0e-48 196.4 118 83.9
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 1.3e-47 193.7 125 78.4
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 2.1e-45 186.4 120 75.8
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 2.8e-45 186.0 106 85.8
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 1.4e-44 183.7 153 63.4
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 8.3e-42 174.5 108 82.4
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.9e-38 163.3 147 60.5
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 7.8e-32 141.4 191 47.6
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 1.9e-30 136.7 92 75.0
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 7.3e-30 134.8 185 42.7
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 8.1e-29 131.3 178 43.3
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 2.2e-26 123.2 134 51.5
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 8.4e-26 121.3 138 45.7
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 1.5e-22 110.5 184 39.1
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 2.8e-21 106.3 247 32.0
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 1.1e-20 104.4 174 42.0
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 7.1e-09 65.1 48 70.8
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 3.0e-07 59.7 33 81.8
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 3.9e-07 59.3 142 30.3
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 3.9e-07 59.3 40 65.0
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 5.1e-07 58.9 70 42.9
TAR371G0726 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.1e-06 57.8 33 84.8


User provided reference genes

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