Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1057100 Malus domestica HOM05D005494 ORTHO05D006689 2.0e-225 785.4 390 100.0
Prupe.5G182300 Prunus persica HOM05D005494 ORTHO05D006689 1.8e-181 639.4 379 83.6
MD06G1183600 Malus domestica HOM05D005494 ORTHO05D006689 7.7e-177 624.0 381 84.5
MD14G1189700 Malus domestica HOM05D005494 ORTHO05D006689 1.4e-173 613.2 417 77.2
RcHm_v2.0_Chr7g0180051 Rosa chinensis HOM05D005494 ORTHO05D006689 2.5e-167 592.4 379 77.8
FAN04G1682 Fragaria x ananassa HOM05D005494 ORTHO05D006689 4.0e-165 585.1 379 76.8
QL10p014050 Quercus lobata HOM05D005494 ORTHO05D006689 5.7e-164 581.3 378 76.5
FAN18G0952 Fragaria x ananassa HOM05D005494 ORTHO05D006689 2.2e-163 579.3 398 73.9
Haze_07413 Corylus avellana HOM05D005494 ORTHO05D006689 7.7e-161 570.9 408 70.8
FAN13G0712 Fragaria x ananassa HOM05D005494 ORTHO05D006689 2.3e-160 569.3 394 73.1
Cfa019036 Carpinus fangiana HOM05D005494 ORTHO05D006689 9.5e-159 563.9 379 74.4
CiPaw.11G034500 Carya illinoinensis HOM05D005494 ORTHO05D006689 1.7e-155 553.1 379 72.3
Dinv13115 Davidia involucrata HOM05D005494 ORTHO05D006689 1.1e-154 550.4 379 72.0
GSVIVG01008098001 Vitis vinifera HOM05D005494 ORTHO05D006689 4.1e-154 548.5 379 72.0
CANSAT80G2452 Cannabis sativa HOM05D005494 ORTHO05D006689 7.0e-154 547.7 379 71.8
Ciclev10020622m.g Citrus clementina HOM05D005494 ORTHO05D006689 1.2e-153 547.0 372 72.3
Gorai.008G189500 Gossypium raimondii HOM05D005494 ORTHO05D006689 4.6e-153 545.0 376 71.3
Dinv07986 Davidia involucrata HOM05D005494 ORTHO05D006689 5.9e-153 544.7 379 71.2
Gohir.D12G177100 Gossypium hirsutum HOM05D005494 ORTHO05D006689 5.9e-153 544.7 376 71.0
Gohir.A12G174400 Gossypium hirsutum HOM05D005494 ORTHO05D006689 1.9e-151 539.7 376 70.7
Hma1.2p1_0572F.1_g181100 Hydrangea macrophylla HOM05D005494 ORTHO05D006689 2.5e-151 539.3 372 71.0
CSS0010415 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 4.3e-151 538.5 381 70.9
CSS0047784 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 4.3e-151 538.5 381 70.9
COL.COLO4_07634 Corchorus olitorius HOM05D005494 ORTHO05D006689 7.3e-151 537.7 378 70.6
Manes.14G072100 Manihot esculenta HOM05D005494 ORTHO05D006689 1.4e-149 533.5 379 71.2
Potri.012G073500 Populus trichocarpa HOM05D005494 ORTHO05D006689 1.4e-149 533.5 379 70.4
Duzib084G0032 Durio zibethinus HOM05D005494 ORTHO05D006689 2.0e-148 529.6 377 70.3
Glyma.05G004700 Glycine max HOM05D005494 ORTHO05D006689 2.0e-148 529.6 368 68.8
ClCG01G014230 Citrullus lanatus HOM05D005494 ORTHO05D006689 1.7e-147 526.6 380 68.4
Glyma.04G177200 Glycine max HOM05D005494 ORTHO05D006689 3.7e-147 525.4 371 68.5
CsaV3_1G008090 Cucumis sativus L. HOM05D005494 ORTHO05D006689 6.4e-147 524.6 373 68.9
Thecc.10G120900 Theobroma cacao HOM05D005494 ORTHO05D006689 6.4e-147 524.6 367 72.2
Actinidia04945 Actinidia chinensis HOM05D005494 ORTHO05D006689 1.9e-146 523.1 377 68.7
Lalb_Chr08g0236101 Lupinus albus HOM05D005494 ORTHO05D006689 9.2e-146 520.8 378 68.5
Phvul.004G010600 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 2.0e-145 519.6 371 68.2
Sed0009281 Sechium edule HOM05D005494 ORTHO05D006689 1.3e-144 516.9 373 68.4
TWI09G1329 Tripterygium wilfordii HOM05D005494 ORTHO05D006689 3.0e-144 515.8 394 65.7
Eucgr.B00382 Eucalyptus grandis HOM05D005494 ORTHO05D006689 1.4e-141 506.9 374 69.5
Nn3g17064 Nelumbo nucifera HOM05D005494 ORTHO05D006689 3.1e-141 505.8 381 65.4
VMungo0464G1007 Vigna mungo HOM05D005494 ORTHO05D006689 3.1e-141 505.8 371 66.8
TAR629G2056 Trochodendron aralioides HOM05D005494 ORTHO05D006689 5.2e-141 505.0 360 68.9
Lj1g0011553 Lotus japonicus HOM05D005494 ORTHO05D006689 1.5e-140 503.4 371 67.1
Cpa.g.sc30.67 Carica papaya HOM05D005494 ORTHO05D006689 1.7e-139 500.0 394 62.2
Ca_18065_v3 Cicer arietinum L. HOM05D005494 ORTHO05D006689 2.2e-139 499.6 367 66.8
Sabra12G0052300 Salix brachista HOM05D005494 ORTHO05D006689 1.1e-138 497.3 361 69.0
arahy.Tifrunner.gnm1.ann1.Y2W2NU Arachis hypogaea HOM05D005494 ORTHO05D006689 9.2e-138 494.2 376 65.2
FvH4_5g16020 Fragaria vesca HOM05D005494 ORTHO05D006689 1.0e-136 490.7 319 75.5
Psat7g041440 Pisum sativum HOM05D005494 ORTHO05D006689 3.0e-136 489.2 371 65.5
Peaxi162Scf00017g02118 Petunia axillaris HOM05D005494 ORTHO05D006689 1.9e-135 486.5 379 64.6
SGA_v2.0_scaffold7G04099 Striga asiatica HOM05D005494 ORTHO05D006689 3.3e-135 485.7 379 64.4
MELO3C002226.2 Cucumis melo HOM05D005494 ORTHO05D006689 4.3e-135 485.3 374 65.8
MSTRG.9655 Avicennia marina HOM05D005494 ORTHO05D006689 5.6e-135 485.0 379 65.4
Hund09389 Selenicereus undatus HOM05D005494 ORTHO05D006689 1.2e-134 483.8 369 64.0
Sopen03g032650 Solanum pennellii HOM05D005494 ORTHO05D006689 2.1e-134 483.0 379 63.6
Solyc03g113610.4 Solanum lycopersicum HOM05D005494 ORTHO05D006689 2.8e-134 482.6 379 63.3
PGSC0003DMG400024571 Solanum tuberosum HOM05D005494 ORTHO05D006689 1.1e-133 480.7 381 62.7
DCAR_026093 Daucus carota HOM05D005494 ORTHO05D006689 1.2e-132 477.2 379 64.1
AUR62008313 Chenopodium quinoa HOM05D005494 ORTHO05D006689 5.8e-132 474.9 375 64.3
Lj4g0024662 Lotus japonicus HOM05D005494 ORTHO05D006689 5.8e-132 474.9 348 68.4
vmacro19338 Vaccinium macrocarpon HOM05D005494 ORTHO05D006689 9.9e-132 474.2 475 54.7
AUR62021784 Chenopodium quinoa HOM05D005494 ORTHO05D006689 2.2e-131 473.0 375 64.5
AUR62022932 Chenopodium quinoa HOM05D005494 ORTHO05D006689 1.4e-130 470.3 370 63.8
arahy.Tifrunner.gnm1.ann1.QI1X69 Arachis hypogaea HOM05D005494 ORTHO05D006689 7.1e-130 468.0 368 63.3
Rhsim08G0163400 Rhododendron simsii HOM05D005494 ORTHO05D006689 2.1e-129 466.5 421 59.4
Nitab4.5_0000642g0180 Nicotiana tabacum HOM05D005494 ORTHO05D006689 6.0e-129 464.9 373 62.7
Aqoxy3G03184 Aquilegia oxysepala HOM05D005494 ORTHO05D006689 3.0e-128 462.6 375 62.7
Oeu038310.1 Olea europaea HOM05D005494 ORTHO05D006689 3.9e-128 462.2 368 61.1
EL10Ac5g10874 Beta vulgaris HOM05D005494 ORTHO05D006689 3.6e-126 455.7 390 59.2
Psat7g079600 Pisum sativum HOM05D005494 ORTHO05D006689 4.0e-125 452.2 354 63.3
TAR622G0530 Trochodendron aralioides HOM05D005494 ORTHO05D006689 1.5e-124 450.3 359 63.8
CAN.G999.3 Capsicum annuum HOM05D005494 ORTHO05D006689 3.4e-124 449.1 379 61.5
PSO591G0251 Papaver somniferum HOM05D005494 ORTHO05D006689 1.4e-122 443.7 378 58.5
Lj5C118G23 Lonicera japonica HOM05D005494 ORTHO05D006689 2.4e-122 443.0 319 68.3
Cc04_g16070 Coffea canephora HOM05D005494 ORTHO05D006689 1.6e-121 440.3 347 64.6
Nitab4.5_0009486g0030 Nicotiana tabacum HOM05D005494 ORTHO05D006689 1.6e-121 440.3 347 64.6
Migut.N01938 Erythranthe guttata HOM05D005494 ORTHO05D006689 2.7e-121 439.5 376 60.1
PSO832G2211 Papaver somniferum HOM05D005494 ORTHO05D006689 2.3e-120 436.4 378 58.2
THA.LOC104814121 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 3.0e-120 436.0 371 60.1
THA.LOC104818279 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 3.6e-118 429.1 370 59.2
AT5G11010 Arabidopsis thaliana HOM05D005494 ORTHO05D006689 1.8e-117 426.8 363 58.7
Aa31LG3G16120 Aethionema arabicum HOM05D005494 ORTHO05D006689 2.4e-117 426.4 370 57.3
AL6G21610 Arabidopsis lyrata HOM05D005494 ORTHO05D006689 4.0e-117 425.6 363 59.0
Migut.D01889 Erythranthe guttata HOM05D005494 ORTHO05D006689 4.0e-117 425.6 377 58.6
Sp6g32480 Schrenkiella parvula HOM05D005494 ORTHO05D006689 9.0e-117 424.5 373 58.7
Carub.0006s0951 Capsella rubella HOM05D005494 ORTHO05D006689 1.5e-116 423.7 363 58.7
Thhalv10000203m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 1.5e-116 423.7 365 58.9
TPR.G17080 Trifolium pratense HOM05D005494 ORTHO05D006689 2.6e-116 422.9 378 57.9
CARHR202280 Cardamine hirsuta HOM05D005494 ORTHO05D006689 1.3e-115 420.6 365 59.5
HanXRQChr02g0045331 Helianthus annuus HOM05D005494 ORTHO05D006689 4.9e-115 418.7 357 58.8
Atru.chr9.2369 Acer truncatum HOM05D005494 ORTHO05D006689 1.9e-114 416.8 299 70.6
SHI07761 Sapria himalayana HOM05D005494 ORTHO05D006689 2.4e-114 416.4 360 59.4
HanXRQChr16g0516751 Helianthus annuus HOM05D005494 ORTHO05D006689 1.9e-111 406.8 354 58.5
Lsat_1_v5_gn_1_11340 Lactuca sativa HOM05D005494 ORTHO05D006689 1.3e-110 404.1 369 56.4
Medtr8g080150 Medicago truncatula HOM05D005494 ORTHO05D006689 2.1e-110 403.3 352 60.2
AUR62012293 Chenopodium quinoa HOM05D005494 ORTHO05D006689 2.4e-109 399.8 375 56.8
Oeu039559.2 Olea europaea HOM05D005494 ORTHO05D006689 2.9e-107 392.9 302 64.2
A10p26670 Brassica napus HOM05D005494 ORTHO05D006689 1.0e-104 384.4 370 53.0
C09p65840 Brassica napus HOM05D005494 ORTHO05D006689 3.0e-104 382.9 370 53.0
HPP92_008786 Vanilla planifolia HOM05D005494 ORTHO05D006689 3.3e-103 379.4 363 54.3
Medtr8g080140 Medicago truncatula HOM05D005494 ORTHO05D006689 2.8e-102 376.3 368 56.0
SEGI_00948 Sequoiadendron giganteum HOM05D005494 ORTHO05D006689 4.8e-102 375.6 400 50.0
Zm00001eb121920 Zea mays HOM05D005494 ORTHO05D006689 4.8e-102 375.6 379 52.0
Lalb_Chr07g0182421 Lupinus albus HOM05D005494 ORTHO05D006689 1.1e-101 374.4 272 68.4
ECA247G2071 Erigeron canadensis HOM05D005494 ORTHO05D006689 1.4e-101 374.0 368 53.0
Lsat_1_v5_gn_5_17360 Lactuca sativa HOM05D005494 ORTHO05D006689 2.4e-101 373.2 364 52.2
Os01g0184000 Oryza sativa ssp. japonica HOM05D005494 ORTHO05D006689 4.0e-101 372.5 374 52.4
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 3.4e-100 369.4 300 63.3
unitig_8.g3614 Utricularia gibba HOM05D005494 ORTHO05D006689 9.3e-98 361.3 305 60.7
BcaC04g19267 Brassica carinata HOM05D005494 ORTHO05D006689 1.1e-95 354.4 366 51.9
Aa31LG10G14040 Aethionema arabicum HOM05D005494 ORTHO05D006689 1.6e-94 350.5 366 50.8
Oeu038311.1 Olea europaea HOM05D005494 ORTHO05D006689 4.8e-94 349.0 240 69.6
HPP92_006463 Vanilla planifolia HOM05D005494 ORTHO05D006689 7.9e-89 331.6 365 45.5
FAN08G3169 Fragaria x ananassa HOM05D005494 ORTHO05D006689 5.9e-84 315.5 190 81.6
Os01g0354700 Oryza sativa ssp. japonica HOM05D005494 ORTHO05D006689 5.9e-84 315.5 348 44.3
GSVIVG01008100001 Vitis vinifera HOM05D005494 ORTHO05D006689 1.4e-77 294.3 183 78.1
Mapoly0002s0051 Marchantia polymorpha HOM05D005494 ORTHO05D006689 4.1e-77 292.7 380 42.6
Pp3c4_400 Physcomitrium patens HOM05D005494 ORTHO05D006689 1.4e-74 284.3 368 41.6
Sc12g0005880 Simmondsia chinensis HOM05D005494 ORTHO05D006689 4.4e-71 272.7 222 61.7
Duzib205G0238 Durio zibethinus HOM05D005494 ORTHO05D006689 3.2e-66 256.5 200 69.0
Sc12g0005890 Simmondsia chinensis HOM05D005494 ORTHO05D006689 1.8e-64 250.8 194 66.0
CDE02G1640 Ceratophyllum demersum HOM05D005494 ORTHO05D006689 2.8e-62 243.4 204 61.8
Glyma.19G005300 Glycine max HOM05D005494 ORTHO05D006689 1.7e-59 234.2 151 76.8
Phvul.009G054101 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 1.3e-51 208.0 136 75.0
Thhalv10015920m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 9.8e-47 191.8 271 44.3
AagrBONN_evm.TU.Sc2ySwM_344.720 Anthoceros agrestis HOM05D005494 ORTHO05D006689 2.8e-46 190.3 283 40.3
BolC9t59405H Brassica oleracea HOM05D005494 ORTHO05D006689 7.0e-45 185.7 168 57.1
Glyma.06G187800 Glycine max HOM05D005494 ORTHO05D006689 1.7e-38 164.5 129 57.4
CBR_g8796 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-36 157.1 338 32.0
GSVIVG01008101001 Vitis vinifera HOM05D005494 ORTHO05D006689 2.8e-33 147.1 85 78.8
Atru.chr3.1308 Acer truncatum HOM05D005494 ORTHO05D006689 4.0e-32 143.3 88 73.9
Lalb_Chr07g0182431 Lupinus albus HOM05D005494 ORTHO05D006689 5.8e-31 139.4 82 76.8
PRCOL_00002205 Prasinoderma coloniale HOM05D005494 ORTHO05D006689 1.7e-30 137.9 323 31.9
SGA_v2.0_scaffold114G31872 Striga asiatica HOM05D005494 ORTHO05D006689 1.8e-24 117.9 95 60.0
Phvul.009G054050 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 6.4e-22 109.4 77 63.6
Cre03.g168350 Chlamydomonas reinhardtii HOM05D005494 ORTHO05D006689 4.1e-21 106.7 207 31.4
VMungo1309G1734 Vigna mungo HOM05D005494 ORTHO05D006689 1.6e-20 104.8 87 64.4
MBI06_g04707_MAGBIO Magnolia biondii HOM05D002360 ORTHO05D006689 5.1e-19 99.8 73 68.5
BraA10t44725Z Brassica rapa HOM05D005494 ORTHO05D006689 1.1e-18 98.6 78 59.0
QL06p038666 Quercus lobata HOM05D000045 ORTHO05D009425 4.7e-09 66.6 44 61.4
Lj5A118T79 Lonicera japonica HOM05D005494 ORTHO05D006689 6.2e-09 66.2 44 72.7
CAN.G226.26 Capsicum annuum HOM05D004526 ORTHO05D005548 4.0e-08 63.5 157 29.3
Nitab4.5_0001504g0050 Nicotiana tabacum HOM05D004526 ORTHO05D005548 5.2e-08 63.2 151 29.1
PGSC0003DMG400030284 Solanum tuberosum HOM05D004526 ORTHO05D005548 1.2e-07 62.0 139 30.9
Eucgr.I01917 Eucalyptus grandis HOM05D004526 ORTHO05D005548 1.5e-07 61.6 142 31.7
Nitab4.5_0000157g0090 Nicotiana tabacum HOM05D004526 ORTHO05D005548 1.5e-07 61.6 139 30.9
Glyma.10G292700 Glycine max HOM05D004526 ORTHO05D005548 4.4e-07 60.1 143 28.7
unitig_578.g15969 Utricularia gibba HOM05D004526 ORTHO05D005548 4.4e-07 60.1 133 29.3
Dinv06512 Davidia involucrata HOM05D004526 ORTHO05D005548 7.6e-07 59.3 129 29.5
Lj7A401T78 Lonicera japonica HOM05D004526 ORTHO05D005548 7.6e-07 59.3 150 28.0
THA.LOC104811064 Tarenaya hassleriana HOM05D004526 ORTHO05D005548 7.6e-07 59.3 147 29.3
Atru.chr8.1914 Acer truncatum HOM05D004526 ORTHO05D005548 9.9e-07 58.9 137 31.4
PSO591G0197 Papaver somniferum HOM05D004526 ORTHO05D005548 9.9e-07 58.9 146 27.4
Peaxi162Scf00345g00811 Petunia axillaris HOM05D004526 ORTHO05D005548 9.9e-07 58.9 139 28.8
arahy.Tifrunner.gnm1.ann1.31SG4H Arachis hypogaea HOM05D004526 ORTHO05D005548 1.3e-06 58.5 141 29.1
arahy.Tifrunner.gnm1.ann1.S1RF4U Arachis hypogaea HOM05D004526 ORTHO05D005548 1.3e-06 58.5 141 29.1
CSS0037061 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 1.7e-06 58.2 139 28.8
Ca_11340_v3 Cicer arietinum L. HOM05D004526 ORTHO05D005548 1.7e-06 58.2 141 27.7
arahy.Tifrunner.gnm1.ann1.9G88ZW Arachis hypogaea HOM05D004526 ORTHO05D005548 2.2e-06 57.8 141 29.8
arahy.Tifrunner.gnm1.ann1.PC3EEW Arachis hypogaea HOM05D004526 ORTHO05D005548 2.2e-06 57.8 141 29.1
Lalb_Chr21g0307111 Lupinus albus HOM05D004526 ORTHO05D005548 2.2e-06 57.8 134 32.8
arahy.Tifrunner.gnm1.ann1.QUI3Q9 Arachis hypogaea HOM05D004526 ORTHO05D005548 2.9e-06 57.4 110 31.8
Glyma.20G242900 Glycine max HOM05D004526 ORTHO05D005548 2.9e-06 57.4 143 28.0
Phvul.007G007300 Phaseolus vulgaris HOM05D004526 ORTHO05D005548 2.9e-06 57.4 136 28.7
Cc08_g10980 Coffea canephora HOM05D004526 ORTHO05D005548 3.8e-06 57.0 139 29.5
Psat6g239400 Pisum sativum HOM05D004526 ORTHO05D005548 3.8e-06 57.0 141 29.1
VMungo0720G0008 Vigna mungo HOM05D004526 ORTHO05D005548 3.8e-06 57.0 136 27.9
Migut.E01591 Erythranthe guttata HOM05D004526 ORTHO05D005548 4.9e-06 56.6 141 29.8
Thhalv10020725m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 6.4e-06 56.2 136 29.4


User provided reference genes

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