Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 0.0e+00 1455.3 835 100.0
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 0.0e+00 1210.3 844 84.8
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 0.0e+00 1172.1 835 81.7
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 1.1e-292 1010.0 836 73.6
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 1.5e-278 963.0 841 72.3
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 7.4e-278 960.7 841 72.1
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.7e-269 931.8 841 70.4
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 6.5e-266 921.0 866 69.2
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 3.3e-233 812.4 824 62.4
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 2.0e-230 803.1 819 59.3
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 2.4e-228 796.2 822 61.3
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 1.2e-227 793.9 822 61.2
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.7e-226 790.0 901 55.7
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 2.9e-221 772.7 821 60.4
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 8.4e-221 771.2 836 60.4
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.1e-220 770.8 836 59.1
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.9e-220 770.0 821 59.0
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 2.4e-220 769.6 834 59.0
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 1.5e-217 760.4 827 60.6
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 8.1e-216 754.6 848 58.4
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 1.5e-214 750.4 834 57.3
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 3.8e-213 745.7 830 57.6
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.6e-211 740.3 827 52.2
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 8.7e-210 734.6 853 54.2
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 5.6e-209 731.9 832 54.6
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 9.6e-209 731.1 828 57.9
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 2.8e-208 729.6 842 59.4
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 2.4e-207 726.5 816 57.2
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 2.6e-206 723.0 837 56.4
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.9e-205 719.5 844 55.7
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 3.8e-205 719.2 844 56.0
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 3.8e-205 719.2 806 54.1
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 4.9e-205 718.8 817 57.6
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 4.9e-205 718.8 833 52.2
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 8.4e-205 718.0 842 58.0
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 9.3e-204 714.5 807 57.9
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 1.0e-202 711.1 821 52.1
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 1.1e-199 701.0 823 50.7
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 2.9e-197 693.0 832 53.0
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 3.8e-197 692.6 797 58.8
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 1.2e-195 687.6 837 54.8
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 2.7e-195 686.4 835 56.2
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.5e-195 686.0 842 56.4
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 1.0e-194 684.5 785 59.4
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.8e-194 683.7 842 56.3
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 3.3e-193 679.5 839 54.7
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 4.3e-193 679.1 831 54.2
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 8.2e-192 674.9 843 53.4
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 1.4e-191 674.1 829 56.2
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.8e-191 673.7 806 54.8
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 1.5e-190 670.6 827 53.6
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.4e-190 669.5 846 53.8
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 3.8e-189 666.0 830 53.3
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 6.5e-189 665.2 830 53.4
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 3.2e-188 662.9 825 49.3
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 4.6e-187 659.1 802 53.9
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 6.0e-187 658.7 856 52.7
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 7.9e-187 658.3 811 51.7
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 1.0e-186 657.9 837 49.1
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 3.0e-186 656.4 814 48.5
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 7.4e-185 651.7 869 51.8
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 9.7e-185 651.4 839 54.1
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 3.1e-183 646.4 831 53.5
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 3.1e-183 646.4 805 53.7
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 5.3e-183 645.6 831 48.6
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.0e-181 641.3 799 50.2
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 8.5e-181 638.3 821 48.0
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 1.4e-180 637.5 818 52.1
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 2.5e-180 636.7 804 52.2
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 3.2e-180 636.3 870 49.5
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.2e-179 634.4 687 59.5
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 5.1e-178 629.0 775 49.7
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 2.5e-177 626.7 837 52.4
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 1.3e-176 624.4 790 53.3
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 4.8e-176 622.5 833 52.1
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.2e-174 617.8 827 50.5
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 4.5e-174 615.9 798 52.5
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.9e-172 610.5 810 52.3
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 3.2e-172 609.8 791 52.6
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.6e-171 607.4 800 52.2
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 3.6e-171 606.3 794 53.0
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 5.1e-170 602.4 764 52.6
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 2.8e-168 596.7 803 52.2
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 3.7e-168 596.3 803 52.3
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 3.7e-168 596.3 834 50.5
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 3.7e-168 596.3 811 51.2
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 1.8e-167 594.0 839 50.9
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 5.9e-166 589.0 692 56.6
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 7.7e-166 588.6 804 52.4
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 1.0e-165 588.2 684 58.5
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 6.5e-165 585.5 816 52.5
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 6.5e-165 585.5 814 52.5
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 3.2e-164 583.2 804 52.1
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 2.1e-163 580.5 818 50.5
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 2.6e-161 573.5 500 62.0
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.9e-156 557.4 809 49.7
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 1.4e-154 551.2 808 49.6
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 8.5e-149 531.9 817 44.9
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 4.5e-142 509.6 833 47.2
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 3.3e-140 503.4 747 51.1
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 2.7e-134 483.8 879 45.7
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 8.6e-133 478.8 862 42.3
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 1.7e-128 464.5 483 56.3
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 2.9e-128 463.8 902 39.5
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 5.2e-122 443.0 876 42.9
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 1.9e-119 434.5 826 45.6
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.6e-110 404.8 775 44.6
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 6.6e-101 372.9 871 40.2
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 2.9e-96 357.5 829 35.9
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 1.0e-85 322.4 502 43.0
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 2.5e-84 317.8 581 46.3
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 4.8e-83 313.5 501 42.3
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 1.4e-79 302.0 574 36.9
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 4.5e-73 280.4 250 60.0
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.1e-62 245.0 469 38.4
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 3.9e-61 240.7 821 27.6
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 1.2e-49 202.6 832 29.0
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.7e-46 191.4 197 57.9
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 6.1e-38 163.7 709 33.1
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 1.0e-37 162.9 180 48.3
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 4.4e-36 157.5 214 40.7
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 5.7e-36 157.1 118 65.3
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 1.3e-35 156.0 448 30.4
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 4.8e-35 154.1 383 33.2
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 2.0e-33 148.7 152 54.6
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 6.8e-29 133.7 140 51.4
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 2.3e-21 108.6 171 42.1
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 2.8e-19 101.7 77 64.9
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 4.5e-17 94.4 121 49.6
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 2.3e-16 92.0 77 55.8
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 2.0e-12 79.0 172 38.4
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 1.1e-10 73.2 47 76.6
Ah.06g195260 Amaranthus hybridus HOM05D005855 ORTHO05D006406 9.5e-07 60.1 111 36.0
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 1.2e-06 59.7 61 54.1
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 2.8e-06 58.5 65 49.2


User provided reference genes

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