Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 2120.5 1054 100.0
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1965.7 1035 93.3
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1921.0 1042 91.0
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1874.0 1043 88.9
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1865.5 1054 88.0
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1854.0 1051 87.7
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1803.5 1049 85.8
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1802.3 1036 85.2
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1800.0 1036 85.8
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1797.3 1035 85.2
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1796.9 1036 85.5
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1789.6 1036 85.5
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1786.9 1039 85.0
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1780.8 1036 85.1
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1773.4 1036 84.8
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1772.7 1036 84.1
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1772.3 1036 84.2
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1765.7 1035 83.8
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1760.7 1036 83.6
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1756.9 1036 83.5
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1755.0 1036 82.9
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1750.7 1036 83.0
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1750.3 1036 83.4
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1746.1 1037 84.0
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1745.3 1036 83.4
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1744.9 1039 82.8
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1741.5 1035 82.8
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1741.5 1035 83.0
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1741.5 1036 81.9
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1734.5 1037 82.8
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1732.6 1037 82.5
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1732.2 1042 82.1
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1730.7 1096 79.2
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1729.9 1036 82.1
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1729.5 1035 82.2
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1728.8 1038 82.2
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1725.3 1036 82.3
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1718.0 1037 81.9
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1713.7 1035 81.7
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1713.7 1035 81.7
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1712.6 1033 80.6
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1710.7 1040 81.0
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1710.3 1040 80.9
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1708.3 1037 80.5
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1707.2 1036 80.3
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1706.0 1040 80.8
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1704.9 1034 80.2
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1703.3 1037 81.7
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1693.7 1032 82.0
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1687.5 1037 80.2
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1685.2 1040 79.7
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1684.5 1062 78.4
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1680.6 1040 79.4
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1679.1 1037 79.6
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1678.7 1040 79.4
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1678.3 1101 75.7
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1677.5 1045 79.3
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1675.2 1036 80.1
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1663.7 1036 79.9
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1662.9 1039 78.1
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1657.9 1072 77.6
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1657.5 1041 78.3
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1651.0 986 82.5
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1648.6 1036 77.8
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1646.3 1035 78.5
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1630.2 1037 77.2
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1627.1 1165 72.3
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1624.8 1000 81.7
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1621.7 1040 76.4
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1621.3 1042 76.6
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1618.6 1036 76.7
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1615.5 1038 77.1
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1604.3 1040 76.0
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1599.3 1031 76.3
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1598.9 1040 75.8
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1595.1 1033 76.9
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1593.2 1042 75.8
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1588.9 1235 68.4
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1577.8 1036 75.0
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1577.4 1044 75.1
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1576.2 1044 75.0
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1561.6 1044 74.6
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1561.6 1044 74.6
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1555.8 1041 76.4
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1515.4 891 83.5
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1504.2 1082 72.5
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1503.8 1070 71.3
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1470.7 1055 69.7
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1468.8 1042 71.7
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1446.0 837 85.2
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1440.6 833 85.2
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1434.9 1050 70.0
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1432.9 1040 68.5
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1412.9 1055 69.1
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1409.4 1039 67.2
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1407.9 1039 67.4
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1373.6 782 87.5
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1313.5 889 75.3
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1301.6 922 70.9
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1298.9 782 80.9
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1290.4 779 80.1
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1258.4 822 74.7
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.4e-311 1073.2 668 82.5
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 1.4e-310 1069.7 598 87.5
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 4.2e-310 1068.1 1443 45.5
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 1.4e-305 1053.1 1060 51.4
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 7.7e-280 967.6 1038 49.1
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.7e-279 966.5 668 70.2
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.3e-271 940.3 1079 46.3
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.3e-263 913.7 1081 46.0
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.4e-260 903.7 581 79.2
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.3e-250 870.5 736 61.1
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 1.1e-249 867.5 1295 38.5
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.5e-222 777.3 442 86.9
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 5.8e-211 738.8 552 68.5
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 6.4e-202 708.8 451 76.5
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 5.5e-193 679.1 586 56.8
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 4.6e-184 649.4 434 71.2
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.4e-164 583.9 347 83.6
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 6.7e-159 565.8 451 65.0
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 3.7e-141 506.9 312 79.2
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 2.2e-109 401.4 1092 30.1
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 3.4e-102 377.5 246 78.9
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 7.1e-92 343.2 266 69.9
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 7.3e-89 333.2 772 31.9
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 3.0e-82 311.2 1459 22.7
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.6e-78 298.1 188 73.9
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 6.7e-74 283.5 191 69.6
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 5.8e-70 270.4 294 53.1
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 7.4e-65 253.4 150 90.0
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 4.8e-64 250.8 186 66.1
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 5.0e-61 240.7 233 54.1
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.0e-58 233.0 316 39.6
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.0e-58 231.5 212 59.9
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.5e-52 210.7 595 31.9
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.1e-47 194.9 245 44.5
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 8.5e-45 186.8 329 42.2
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.5e-44 186.0 189 53.4
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 9.4e-44 183.3 113 75.2
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 2.4e-39 168.7 157 64.3
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 5.3e-39 167.5 152 65.8
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 5.9e-38 164.1 183 52.5
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.3e-37 162.9 706 23.2
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.3e-37 162.9 148 62.8
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.2e-28 131.7 85 68.2
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.0e-26 125.2 138 53.6
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 6.8e-26 124.0 164 46.3
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.1e-23 116.7 65 83.1
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 3.1e-23 115.2 74 74.3
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 5.5e-20 104.4 161 40.4
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.6e-19 102.8 67 68.7
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 4.0e-18 98.2 60 80.0
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 2.6e-17 95.5 70 67.1
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 1.3e-16 93.2 95 54.7
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 8.3e-16 90.5 69 66.7
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 7.0e-15 87.4 45 86.7
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-14 86.7 80 60.0
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 1.3e-13 83.2 59 71.2
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.5e-12 79.0 56 67.9
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 9.5e-12 77.0 55 63.6
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.4e-10 73.2 43 74.4
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 3.1e-10 72.0 49 67.3
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 8.9e-10 70.5 34 82.4
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 9.2e-07 60.5 41 63.4
Rhsim06G0128800 Rhododendron simsii HOM05D000263 ORTHO05D000213 4.6e-06 58.2 42 61.9


User provided reference genes

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