Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 8.1e-216 753.4 375 100.0
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 3.9e-117 425.6 349 67.9
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 8.4e-104 381.3 321 60.7
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 5.4e-103 378.6 369 57.5
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 2.7e-102 376.3 322 61.2
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.0e-101 374.4 322 61.2
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.9e-101 372.5 322 60.2
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-100 370.2 324 60.5
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 2.8e-99 366.3 344 59.6
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 3.1e-98 362.8 343 59.8
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 6.9e-98 361.7 330 59.4
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 2.6e-97 359.8 336 57.1
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 2.6e-97 359.8 330 60.3
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.4e-97 359.4 330 60.9
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 5.8e-97 358.6 330 60.3
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.8e-97 358.6 330 60.3
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 2.2e-96 356.7 332 57.8
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.8e-96 355.9 350 57.4
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 6.4e-96 355.1 346 58.1
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.2e-95 352.4 329 59.6
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 2.1e-94 350.1 338 57.7
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 2.1e-94 350.1 334 59.9
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 3.5e-94 349.4 335 58.5
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 6.0e-94 348.6 335 58.5
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.3e-93 347.4 335 58.2
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.7e-93 347.1 329 57.8
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 2.3e-93 346.7 334 56.6
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.1e-92 344.4 331 57.4
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.9e-92 343.6 345 56.5
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 3.3e-92 342.8 329 57.1
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 7.3e-92 341.7 330 58.2
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.3e-91 340.9 333 56.8
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.6e-91 340.5 328 57.3
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 2.8e-91 339.7 352 53.4
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 3.6e-91 339.3 331 58.3
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 4.8e-91 339.0 408 49.3
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.1e-90 337.8 369 51.8
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.4e-90 337.4 330 56.1
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.4e-90 337.4 349 55.3
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.8e-90 337.0 340 55.3
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 5.3e-90 335.5 337 54.3
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 5.3e-90 335.5 331 55.9
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 5.3e-90 335.5 340 55.3
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 6.9e-90 335.1 333 54.7
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 9.0e-90 334.7 354 54.0
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.2e-89 334.3 329 56.2
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.2e-89 334.3 337 55.5
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 2.6e-89 333.2 310 60.6
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.4e-89 332.8 331 55.0
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.4e-89 332.8 331 55.0
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 4.5e-89 332.4 329 54.4
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 5.8e-89 332.0 330 55.8
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 5.8e-89 332.0 369 52.0
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 7.6e-89 331.6 350 52.6
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 9.9e-89 331.3 330 55.8
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.3e-88 330.9 327 55.4
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.2e-88 330.1 337 54.6
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 2.9e-88 329.7 329 54.1
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 4.9e-88 328.9 328 55.8
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 4.9e-88 328.9 331 53.8
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 6.4e-88 328.6 340 55.6
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 8.4e-88 328.2 331 54.1
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.4e-87 327.4 357 52.7
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.9e-87 327.0 328 53.7
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.4e-87 326.6 352 53.4
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 2.4e-87 326.6 358 54.2
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 2.4e-87 326.6 386 50.8
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.4e-87 326.6 356 51.1
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.4e-87 326.6 356 51.1
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 3.2e-87 326.2 329 54.1
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 4.2e-87 325.9 343 53.6
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 7.1e-87 325.1 310 60.0
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 7.1e-87 325.1 332 53.6
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 2.7e-86 323.2 352 52.8
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 2.7e-86 323.2 352 52.8
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.5e-86 322.8 373 52.0
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 1.8e-85 320.5 330 53.6
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.8e-85 320.5 349 53.0
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 3.0e-85 319.7 354 52.8
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.0e-85 319.7 349 53.0
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.0e-85 319.7 329 52.9
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 2.5e-84 316.6 284 59.5
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 5.6e-84 315.5 335 53.1
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.3e-83 314.3 337 52.2
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.3e-83 314.3 379 49.3
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 4.0e-82 309.3 331 52.6
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.2e-81 307.8 311 56.3
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 2.6e-81 306.6 312 53.8
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.4e-79 300.8 287 57.1
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.5e-79 300.1 336 51.2
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 5.5e-79 298.9 347 49.6
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 5.5e-79 298.9 331 50.5
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 9.3e-79 298.1 330 50.9
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 9.3e-79 298.1 282 57.4
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.5e-78 296.2 292 57.5
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 7.9e-78 295.0 338 49.7
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 7.9e-78 295.0 336 52.1
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 2.3e-77 293.5 337 51.3
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.9e-77 292.7 288 57.6
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 4.3e-76 289.3 338 46.4
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.1e-75 287.0 309 53.1
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 6.2e-75 285.4 317 51.4
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 4.5e-73 279.3 460 40.0
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.0e-72 278.1 267 57.7
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.7e-72 277.3 332 49.7
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 2.2e-72 276.9 269 56.5
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 1.1e-71 274.6 332 48.5
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 2.7e-70 270.0 381 45.9
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 2.7e-70 270.0 329 49.2
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.7e-70 270.0 325 47.4
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 6.1e-70 268.9 329 48.3
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 2.8e-67 260.0 384 43.2
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.2e-63 246.1 331 47.4
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 1.0e-61 241.5 314 49.0
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.8e-61 240.7 291 46.4
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 3.0e-61 240.0 256 55.5
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 2.5e-60 236.9 304 45.4
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.7e-59 234.2 377 41.6
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.8e-58 230.7 289 47.8
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.4e-58 230.3 263 51.3
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.7e-56 224.2 265 48.7
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 2.1e-54 217.2 276 44.2
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.6e-54 216.5 324 42.6
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.9e-53 213.0 332 38.9
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.7e-53 212.2 321 39.3
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 5.7e-52 209.1 329 38.9
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.6e-49 200.3 258 46.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.1e-47 194.9 175 57.1
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 6.1e-46 189.1 271 45.8
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.1e-42 178.3 154 61.7
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 3.8e-40 169.9 294 37.4
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 4.7e-38 162.9 332 35.2
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 4.7e-38 162.9 181 49.7
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.0e-36 157.5 223 38.6
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.3e-35 154.8 319 34.5
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.1e-34 151.8 148 56.8
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 7.0e-34 149.1 244 36.9
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 7.7e-33 145.6 272 36.0
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 8.5e-32 142.1 259 38.6
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 4.7e-30 136.3 260 33.8
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 6.8e-29 132.5 91 65.9
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.2e-28 131.7 155 48.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 5.7e-28 129.4 139 56.8
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 7.5e-28 129.0 264 33.3
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 2.1e-22 110.9 73 71.2
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 2.1e-22 110.9 73 71.2
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 2.8e-22 110.5 306 30.1
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.6e-22 110.2 253 31.2
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.6e-22 110.2 282 28.4
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 4.7e-22 109.8 73 69.9
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 4.9e-19 99.8 293 29.7
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 6.4e-19 99.4 137 36.5
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 6.4e-19 99.4 114 41.2
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.0e-18 95.9 253 29.2
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 1.2e-17 95.1 296 28.7
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.0e-17 94.4 271 28.8
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.1e-15 88.6 84 58.3
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.3e-15 87.0 107 43.9
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 1.4e-13 81.6 68 55.9
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 7.0e-10 69.3 232 28.4
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 7.8e-09 65.9 77 49.4
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 2.3e-08 64.3 92 45.7


User provided reference genes

Program Settings