Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 2.8e-49 198.4 106 100.0
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 2.1e-36 155.6 110 79.1
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 8.0e-28 127.1 122 62.3
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 7.3e-21 104.0 120 55.0
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 3.1e-19 98.6 122 52.5
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 6.8e-19 97.4 122 51.6
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 6.8e-19 97.4 122 51.6
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 5.8e-18 94.4 122 50.8
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 5.8e-18 94.4 122 50.8
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 4.9e-17 91.3 101 56.4
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 6.0e-15 84.3 114 50.9
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 7.8e-15 84.0 105 53.3
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 1.3e-14 83.2 116 50.9
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 1.3e-14 83.2 107 53.3
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.3e-14 82.4 123 46.3
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 2.3e-14 82.4 116 50.0
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 3.9e-14 81.6 103 50.5
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 6.6e-14 80.9 114 48.2
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 8.6e-14 80.5 109 49.5
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.5e-13 79.7 79 58.2
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 1.9e-13 79.3 109 49.5
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 1.9e-13 79.3 108 50.9
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.5e-13 79.0 108 50.9
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 3.3e-13 78.6 108 50.9
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 3.3e-13 78.6 125 44.8
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 4.3e-13 78.2 70 64.3
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 1.2e-12 76.6 119 47.1
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.6e-12 76.3 116 46.6
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 1.6e-12 76.3 126 44.4
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 8.1e-12 73.9 126 42.9
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 1.4e-11 73.2 101 46.5
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 1.4e-11 73.2 107 44.9
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 1.8e-11 72.8 127 44.1
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 2.3e-11 72.4 91 48.4
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.0e-11 71.6 111 45.0
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.0e-11 71.6 111 45.0
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.0e-11 71.6 107 45.8
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 5.2e-11 71.2 67 59.7
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 5.2e-11 71.2 122 41.8
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 5.2e-11 71.2 110 50.9
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 5.2e-11 71.2 69 59.4
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 6.8e-11 70.9 93 50.5
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 6.8e-11 70.9 114 42.1
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 8.9e-11 70.5 114 48.2
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 1.2e-10 70.1 127 39.4
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 1.5e-10 69.7 125 42.4
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 2.6e-10 68.9 54 66.7
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 2.6e-10 68.9 112 44.6
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 5.8e-10 67.8 112 42.0
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 9.9e-10 67.0 106 41.5
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.3e-09 66.6 71 59.2
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 1.7e-09 66.2 61 60.7
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 1.7e-09 66.2 61 60.7
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 1.7e-09 66.2 61 60.7
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.7e-09 66.2 113 45.1
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.9e-09 65.5 108 45.4
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.9e-09 65.5 112 45.5
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 4.9e-09 64.7 35 85.7
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 4.9e-09 64.7 106 41.5
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 6.4e-09 64.3 80 52.5
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 2.4e-08 62.4 33 87.9
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 2.4e-08 62.4 114 42.1
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 3.2e-08 62.0 58 56.9
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 3.2e-08 62.0 99 38.4
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 4.1e-08 61.6 104 45.2
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 4.1e-08 61.6 67 50.7
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 5.4e-08 61.2 64 50.0
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 5.4e-08 61.2 95 42.1
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 5.4e-08 61.2 101 39.6
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 7.1e-08 60.8 113 39.8
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 9.2e-08 60.5 74 54.1
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 1.2e-07 60.1 109 42.2
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.6e-07 59.7 49 63.3
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 1.6e-07 59.7 74 48.6
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 1.6e-07 59.7 69 52.2
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.1e-07 59.3 76 47.4
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.7e-07 58.9 33 81.8
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 3.5e-07 58.5 33 78.8
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 4.6e-07 58.2 112 40.2
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 4.6e-07 58.2 70 50.0
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 6.0e-07 57.8 106 36.8
Nn1g03759 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.3e-06 56.6 117 36.8
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 1.7e-06 56.2 64 48.4
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 1.7e-06 56.2 83 42.2
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 3.9e-06 55.1 41 58.5
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 5.1e-06 54.7 98 34.7
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 5.1e-06 54.7 71 50.7
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 5.1e-06 54.7 32 68.8
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 5.1e-06 54.7 70 48.6
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 6.6e-06 54.3 37 62.2
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 6.6e-06 54.3 34 67.6
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 6.6e-06 54.3 101 37.6
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 8.6e-06 53.9 52 50.0
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 8.6e-06 53.9 52 50.0
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 8.6e-06 53.9 138 33.3
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 8.6e-06 53.9 34 64.7


User provided reference genes

Program Settings