Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 6.5e-114 414.1 210 100.0
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 1.6e-91 339.7 208 82.2
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 7.8e-91 337.4 208 82.2
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.9e-90 335.1 208 80.8
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.9e-89 332.8 208 80.8
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 3.9e-82 308.5 192 77.1
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 8.6e-82 307.4 195 76.4
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 2.5e-81 305.8 191 78.5
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 4.3e-81 305.1 191 79.1
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 1.2e-80 303.5 194 75.8
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 1.6e-80 303.1 195 75.4
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 2.8e-80 302.4 191 77.5
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 3.6e-80 302.0 190 78.4
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.8e-79 299.7 210 72.4
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.3e-79 299.3 210 72.4
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 2.3e-79 299.3 195 73.3
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 4.0e-79 298.5 190 77.4
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 6.8e-79 297.7 192 74.5
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 2.0e-78 296.2 194 72.2
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 2.6e-78 295.8 190 75.3
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 4.4e-78 295.0 248 65.3
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.3e-77 293.5 210 70.0
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 7.1e-76 287.7 188 75.5
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 9.2e-76 287.3 208 66.8
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 1.2e-75 287.0 192 70.3
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 1.2e-75 287.0 242 66.9
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 2.1e-75 286.2 196 69.9
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 2.7e-75 285.8 189 71.4
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 1.3e-74 283.5 208 66.3
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 2.3e-74 282.7 195 70.3
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 2.3e-74 282.7 191 72.8
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 3.0e-74 282.3 195 70.3
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 3.9e-74 282.0 210 68.1
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 3.9e-74 282.0 195 68.2
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 3.9e-74 282.0 208 67.8
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 6.6e-74 281.2 195 69.7
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 1.1e-73 280.4 208 69.2
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 4.3e-73 278.5 184 74.5
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 2.1e-72 276.2 243 60.9
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.8e-72 275.8 184 73.9
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 3.6e-72 275.4 193 69.4
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 1.4e-71 273.5 188 69.1
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 1.8e-71 273.1 197 69.0
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 1.8e-71 273.1 197 69.0
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.0e-71 271.9 166 80.7
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 8.9e-71 270.8 291 53.3
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 1.2e-70 270.4 197 69.0
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.2e-70 270.4 190 69.5
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.2e-70 270.4 210 64.8
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 2.6e-70 269.2 185 71.9
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 1.7e-69 266.5 195 65.1
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 3.7e-69 265.4 189 67.7
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 8.3e-69 264.2 187 66.8
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 1.1e-68 263.8 190 65.3
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 1.9e-68 263.1 192 68.8
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 1.9e-68 263.1 186 67.2
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 3.2e-68 262.3 208 63.5
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 5.4e-68 261.5 189 65.6
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 1.2e-67 260.4 195 64.6
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 2.1e-67 259.6 208 62.0
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 2.7e-67 259.2 193 65.3
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 1.0e-66 257.3 195 64.6
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.3e-66 256.9 189 66.1
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 1.7e-66 256.5 224 60.7
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 3.9e-66 255.4 192 65.6
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 5.1e-66 255.0 195 64.1
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 6.6e-66 254.6 195 64.6
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 3.3e-65 252.3 192 65.6
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 3.3e-65 252.3 212 59.0
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 4.3e-65 251.9 195 63.6
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 4.3e-65 251.9 192 64.6
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 4.3e-65 251.9 195 65.1
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 7.3e-65 251.1 192 65.6
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.2e-64 250.4 190 63.7
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 1.2e-64 250.4 192 65.1
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 1.2e-64 250.4 192 65.1
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 1.2e-64 250.4 192 65.1
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 1.6e-64 250.0 192 64.6
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 2.8e-64 249.2 190 62.6
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 3.6e-64 248.8 193 64.8
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 4.7e-64 248.4 195 63.6
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 1.8e-63 246.5 184 66.3
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 2.4e-63 246.1 192 66.1
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 3.1e-63 245.7 301 48.8
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 2.0e-62 243.0 167 72.5
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 2.9e-61 239.2 188 60.1
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 4.9e-61 238.4 190 63.2
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 8.4e-61 237.7 345 43.5
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 1.1e-60 237.3 144 82.6
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.9e-60 236.5 188 60.6
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 3.2e-60 235.7 191 59.7
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 3.2e-60 235.7 187 58.8
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.2e-59 233.8 190 59.5
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 7.8e-59 231.1 197 60.9
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 1.5e-57 226.9 208 58.2
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 3.3e-57 225.7 210 58.6
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 4.3e-57 225.3 185 61.1
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 2.1e-56 223.0 144 75.0
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 3.1e-55 219.2 186 60.8
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 1.3e-50 203.8 171 58.5
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.7e-50 203.4 152 65.8
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 3.3e-49 199.1 148 66.2
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 4.3e-49 198.7 122 82.0
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.5e-41 173.7 120 70.0
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 9.6e-41 171.0 110 75.5
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 3.7e-40 169.1 195 48.7
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.9e-37 159.5 196 44.4
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 2.9e-37 159.5 189 47.1
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 4.9e-37 158.7 196 42.9
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 4.9e-37 158.7 187 44.4
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 2.5e-36 156.4 144 52.8
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 6.0e-35 151.8 100 72.0
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 3.0e-34 149.4 246 38.6
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 6.7e-34 148.3 208 45.2
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 1.3e-32 144.1 95 70.5
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 9.0e-31 137.9 98 68.4
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 9.3e-28 127.9 119 55.5
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.3e-26 123.2 136 55.1
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 6.3e-24 115.2 80 68.8
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 6.9e-23 111.7 73 74.0
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.2e-20 102.4 89 59.6
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 5.5e-20 102.1 90 57.8
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.2e-20 101.7 89 56.2
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.1e-19 98.6 89 56.2
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 6.1e-19 98.6 87 55.2
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 1.4e-15 87.4 182 33.0
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.1e-15 85.9 86 57.0
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 9.1e-15 84.7 151 31.8
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 1.5e-14 84.0 54 75.9
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.7e-13 80.5 52 73.1
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 1.4e-12 77.4 188 31.4
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 1.9e-12 77.0 56 73.2
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 3.2e-12 76.3 59 69.5
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.2e-12 75.9 49 75.5
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 5.7e-09 65.5 54 55.6
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 5.7e-09 65.5 54 55.6
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 5.7e-09 65.5 56 53.6


User provided reference genes

Program Settings