Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 0.0e+00 1125.9 575 100.0
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 3.9e-312 1073.5 577 96.4
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 3.8e-297 1024.2 578 90.8
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 1.1e-283 979.5 576 87.3
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 6.9e-283 976.9 577 84.1
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 6.9e-283 976.9 577 84.1
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 1.5e-282 975.7 577 84.1
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 2.5e-277 958.4 585 82.1
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 9.0e-275 949.9 578 81.5
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 7.7e-274 946.8 578 81.0
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 5.0e-273 944.1 579 80.7
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 2.5e-272 941.8 581 79.9
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 9.4e-272 939.9 582 79.2
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 4.6e-271 937.6 580 80.5
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 4.6e-271 937.6 577 82.5
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 3.0e-270 934.9 579 79.3
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 6.7e-270 933.7 579 79.3
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 1.1e-269 932.9 582 79.2
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 5.7e-269 930.6 576 81.9
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 3.7e-268 927.9 576 79.0
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 2.4e-267 925.2 576 79.2
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 9.1e-267 923.3 577 80.2
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 1.2e-266 922.9 578 78.9
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 3.4e-266 921.4 578 78.9
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 2.9e-265 918.3 576 77.8
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 6.5e-265 917.1 574 78.9
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 6.5e-265 917.1 572 78.7
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 6.5e-265 917.1 579 78.1
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 8.5e-265 916.8 608 76.2
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 1.4e-264 916.0 577 78.0
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 9.4e-264 913.3 578 77.0
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.2e-263 912.9 577 77.3
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 2.1e-263 912.1 577 77.5
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 4.7e-263 911.0 575 78.3
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 1.0e-262 909.8 577 78.2
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 1.5e-261 906.0 576 77.4
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 1.5e-261 906.0 577 77.1
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 2.6e-261 905.2 574 76.3
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 1.7e-260 902.5 573 80.3
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 2.2e-260 902.1 576 76.7
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 2.8e-260 901.7 577 77.1
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 2.8e-260 901.7 578 76.5
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 5.3e-259 897.5 583 76.8
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 7.0e-259 897.1 580 76.4
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 9.1e-259 896.7 572 76.6
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 9.1e-259 896.7 573 77.3
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 5.9e-258 894.0 528 81.8
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 1.0e-257 893.3 573 78.7
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 1.3e-257 892.9 578 76.3
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 2.9e-257 891.7 580 75.7
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 1.9e-256 889.0 573 76.4
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 2.5e-256 888.6 548 77.2
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 4.7e-255 884.4 528 81.1
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 6.1e-255 884.0 549 77.0
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 6.1e-255 884.0 548 77.4
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 3.0e-254 881.7 575 74.6
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 3.9e-254 881.3 543 78.1
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 5.2e-254 880.9 548 77.0
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 5.2e-254 880.9 548 77.0
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 1.5e-253 879.4 543 76.8
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 1.5e-253 879.4 577 74.7
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 2.6e-253 878.6 575 74.6
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 2.6e-253 878.6 514 82.5
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 7.4e-253 877.1 548 77.0
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 1.3e-252 876.3 578 74.2
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 1.7e-252 875.9 575 75.5
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 2.2e-252 875.5 577 74.4
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 3.7e-252 874.8 552 77.7
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 4.8e-252 874.4 548 76.8
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 4.8e-252 874.4 548 76.8
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 1.1e-251 873.2 577 74.4
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 1.4e-251 872.8 549 76.5
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 7.0e-251 870.5 548 76.1
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 1.2e-250 869.8 575 73.7
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.6e-250 869.4 548 75.9
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 2.0e-250 869.0 575 74.1
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 2.0e-250 869.0 628 71.0
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 4.5e-250 867.8 544 76.1
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 1.3e-249 866.3 543 76.4
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 2.2e-249 865.5 581 73.5
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 9.4e-248 860.1 547 75.7
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 9.4e-248 860.1 547 75.7
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 1.8e-246 855.9 565 74.0
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 2.3e-246 855.5 534 80.9
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 3.0e-246 855.1 579 72.9
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 4.0e-246 854.7 576 72.9
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 5.2e-246 854.4 576 73.6
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 1.1e-243 846.7 514 78.6
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 2.4e-243 845.5 597 71.0
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 3.1e-243 845.1 575 71.5
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 4.5e-242 841.3 594 69.7
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 2.9e-241 838.6 576 72.2
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 6.8e-238 827.4 575 72.9
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 9.8e-237 823.5 662 68.3
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 2.0e-234 815.8 536 74.3
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 7.2e-232 807.4 529 73.7
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 3.6e-231 805.1 578 68.5
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 2.6e-229 798.9 537 72.6
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 4.4e-221 771.5 503 75.1
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 5.6e-216 754.6 448 81.7
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 3.2e-211 738.8 591 62.8
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 1.3e-209 733.4 579 65.1
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.7e-201 706.4 408 83.1
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 1.6e-199 699.9 437 77.1
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 8.1e-199 697.6 435 77.9
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 5.6e-192 674.9 439 75.6
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 5.8e-189 664.8 439 75.9
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 7.9e-186 654.4 434 76.5
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 6.0e-178 628.2 538 58.9
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 6.0e-178 628.2 440 71.1
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 5.0e-164 582.0 444 67.1
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 1.2e-154 550.8 377 76.1
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 4.5e-149 532.3 528 53.0
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 2.2e-148 530.0 545 51.7
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 9.4e-147 524.6 534 53.4
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 1.9e-123 447.2 349 65.6
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 2.3e-121 440.3 582 41.9
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 6.4e-95 352.4 213 84.5
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 7.1e-94 349.0 285 67.0
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-93 347.4 220 73.2
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 8.6e-92 342.0 590 40.2
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 1.7e-87 327.8 386 49.5
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 1.8e-81 307.8 223 65.0
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 2.4e-70 270.8 549 34.6
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 3.1e-65 253.8 534 33.0
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.1e-57 228.8 148 77.0
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.4e-57 227.6 151 74.2
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 2.6e-56 224.2 508 33.1
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 5.5e-54 216.5 139 77.0
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 3.4e-48 197.2 126 72.2
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 9.7e-43 179.1 199 56.3
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 1.6e-42 178.3 103 78.6
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 3.4e-40 170.6 106 78.3
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 7.4e-27 126.3 96 66.7
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 1.6e-21 108.6 74 67.6
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 1.3e-15 89.0 50 76.0
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.2e-15 88.2 63 61.9
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 1.8e-12 78.6 59 74.6
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 1.7e-10 72.0 48 68.8
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 1.8e-09 68.6 301 26.9
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.6e-08 65.5 349 24.4
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 3.5e-08 64.3 349 24.4


User provided reference genes

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