Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G331 Micromonas commoda HOM05D005767 ORTHO05D006785 0.0e+00 1164.1 584 100.0
Sopen03g006310 Solanum pennellii HOM05D005767 ORTHO05D006785 2.0e-48 198.0 600 28.8
Peaxi162Scf00050g00215 Petunia axillaris HOM05D005767 ORTHO05D006785 2.5e-46 191.0 590 29.0
CAN.G1735.5 Capsicum annuum HOM05D005767 ORTHO05D006785 4.3e-46 190.3 592 28.7
Nitab4.5_0006119g0040 Nicotiana tabacum HOM05D005767 ORTHO05D006785 7.3e-46 189.5 598 29.3
Ah.03g148810 Amaranthus hybridus HOM05D005767 ORTHO05D006785 6.2e-45 186.4 611 28.8
Sc16g0002260 Simmondsia chinensis HOM05D005767 ORTHO05D006785 8.0e-45 186.0 622 27.3
CiPaw.07G058900 Carya illinoinensis HOM05D005767 ORTHO05D006785 1.8e-44 184.9 584 28.6
CDE04G0100 Ceratophyllum demersum HOM05D005767 ORTHO05D006785 2.3e-44 184.5 584 28.8
ECA232G4495 Erigeron canadensis HOM05D005767 ORTHO05D006785 1.5e-43 181.8 601 27.8
HanXRQChr09g0256711 Helianthus annuus HOM05D005767 ORTHO05D006785 1.5e-43 181.8 599 27.5
Solyc03g033530.4 Solanum lycopersicum HOM05D005767 ORTHO05D006785 2.0e-43 181.4 585 28.0
MSTRG.23406 Avicennia marina HOM05D005767 ORTHO05D006785 7.5e-43 179.5 592 27.9
Cc07_g10770 Coffea canephora HOM05D005767 ORTHO05D006785 9.8e-43 179.1 599 28.4
Lsat_1_v5_gn_4_144841 Lactuca sativa HOM05D005767 ORTHO05D006785 4.9e-42 176.8 574 27.2
ATR0810G226 Amborella trichopoda HOM05D005767 ORTHO05D006785 2.4e-41 174.5 550 28.0
Nitab4.5_0000438g0060 Nicotiana tabacum HOM05D005767 ORTHO05D006785 2.4e-41 174.5 614 29.0
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 6.0e-40 169.9 343 32.7
Aqoxy6G02211 Aquilegia oxysepala HOM05D005767 ORTHO05D006785 7.8e-40 169.5 394 32.0
Thecc.01G018100 Theobroma cacao HOM05D005767 ORTHO05D006785 1.3e-39 168.7 354 33.3
RcHm_v2.0_Chr2g0099381 Rosa chinensis HOM05D005767 ORTHO05D006785 3.0e-39 167.5 339 33.9
Pp3c17_13320 Physcomitrium patens HOM05D005767 ORTHO05D006785 3.9e-39 167.2 466 32.8
MELO3C007906.2 Cucumis melo HOM05D005767 ORTHO05D006785 5.0e-39 166.8 337 33.5
Lj2C469G1 Lonicera japonica HOM05D005767 ORTHO05D006785 6.6e-39 166.4 521 28.8
CsaV3_6G047130 Cucumis sativus L. HOM05D005767 ORTHO05D006785 8.6e-39 166.0 337 33.5
AUR62003364 Chenopodium quinoa HOM05D005767 ORTHO05D006785 1.1e-38 165.6 352 32.1
FvH4_1g11761 Fragaria vesca HOM05D005767 ORTHO05D006785 1.5e-38 165.2 339 33.9
COL.COLO4_21902 Corchorus olitorius HOM05D005767 ORTHO05D006785 1.9e-38 164.9 354 33.3
MD02G1131900 Malus domestica HOM05D005767 ORTHO05D006785 1.9e-38 164.9 338 34.3
Sp7g33830 Schrenkiella parvula HOM05D005767 ORTHO05D006785 1.9e-38 164.9 605 27.8
Gorai.007G194300 Gossypium raimondii HOM05D005767 ORTHO05D006785 3.3e-38 164.1 344 32.8
Potri.007G057400 Populus trichocarpa HOM05D005767 ORTHO05D006785 4.3e-38 163.7 341 32.3
SMO356G0595 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 4.3e-38 163.7 551 28.9
GSVIVG01018776001 Vitis vinifera HOM05D005767 ORTHO05D006785 4.3e-38 163.7 336 33.6
Aa31LG6G13010 Aethionema arabicum HOM05D005767 ORTHO05D006785 5.6e-38 163.3 589 27.2
Mapoly0107s0007 Marchantia polymorpha HOM05D005767 ORTHO05D006785 5.6e-38 163.3 478 29.9
Sed0019779 Sechium edule HOM05D005767 ORTHO05D006785 5.6e-38 163.3 432 30.6
Psat4g100320 Pisum sativum HOM05D005767 ORTHO05D006785 7.3e-38 162.9 359 32.0
QL06p032910 Quercus lobata HOM05D005767 ORTHO05D006785 9.5e-38 162.5 342 34.2
Prupe.7G168600 Prunus persica HOM05D005767 ORTHO05D006785 1.2e-37 162.2 338 32.8
PGR119G2148 Punica granatum HOM05D005767 ORTHO05D006785 1.2e-37 162.2 576 27.1
AUR62029469 Chenopodium quinoa HOM05D005767 ORTHO05D006785 1.6e-37 161.8 352 31.5
FAN19G2575 Fragaria x ananassa HOM05D005767 ORTHO05D006785 2.1e-37 161.4 335 34.0
TAR376G0924 Trochodendron aralioides HOM05D005767 ORTHO05D006785 2.8e-37 161.0 348 33.3
Nn1g05917 Nelumbo nucifera HOM05D005767 ORTHO05D006785 6.2e-37 159.8 354 32.5
Lj4g0015609 Lotus japonicus HOM05D005767 ORTHO05D006785 8.1e-37 159.5 392 29.8
Manes.01G146000 Manihot esculenta HOM05D005767 ORTHO05D006785 1.1e-36 159.1 281 35.6
PSO541G2118 Papaver somniferum HOM05D005767 ORTHO05D006785 1.1e-36 159.1 285 36.1
Atru.chr3.804 Acer truncatum HOM05D005767 ORTHO05D006785 1.4e-36 158.7 342 32.5
Medtr8g075810 Medicago truncatula HOM05D005767 ORTHO05D006785 1.8e-36 158.3 365 31.0
C01p02980 Brassica napus HOM05D005767 ORTHO05D006785 2.3e-36 157.9 597 28.8
Dinv33631 Davidia involucrata HOM05D005767 ORTHO05D006785 3.1e-36 157.5 340 32.6
Gohir.A11G175000 Gossypium hirsutum HOM05D005767 ORTHO05D006785 4.0e-36 157.1 348 32.5
VMungo0251G0680 Vigna mungo HOM05D005767 ORTHO05D006785 4.0e-36 157.1 373 30.3
AT4G36050 Arabidopsis thaliana HOM05D005767 ORTHO05D006785 5.2e-36 156.8 384 32.6
TPR.G27975 Trifolium pratense HOM05D005767 ORTHO05D006785 5.2e-36 156.8 355 30.4
AL7G15000 Arabidopsis lyrata HOM05D005767 ORTHO05D006785 6.8e-36 156.4 384 31.8
Carub.0007s0418 Capsella rubella HOM05D005767 ORTHO05D006785 6.8e-36 156.4 384 31.5
ClCG01G020330 Citrullus lanatus HOM05D005767 ORTHO05D006785 6.8e-36 156.4 281 36.3
arahy.Tifrunner.gnm1.ann1.G0D851 Arachis hypogaea HOM05D005767 ORTHO05D006785 1.2e-35 155.6 402 29.4
Os09g0536000 Oryza sativa ssp. japonica HOM05D005767 ORTHO05D006785 1.2e-35 155.6 359 31.8
Hund16493 Selenicereus undatus HOM05D005767 ORTHO05D006785 1.5e-35 155.2 396 30.1
DCAR_026000 Daucus carota HOM05D005767 ORTHO05D006785 2.6e-35 154.5 282 35.5
Thhalv10024709m.g Eutrema salsugineum HOM05D005767 ORTHO05D006785 2.6e-35 154.5 386 31.9
BcaNung00769 Brassica carinata HOM05D005767 ORTHO05D006785 3.4e-35 154.1 588 27.2
arahy.Tifrunner.gnm1.ann1.12F6XV Arachis hypogaea HOM05D005767 ORTHO05D006785 5.8e-35 153.3 402 29.4
Ca_22378_v3 Cicer arietinum L. HOM05D005767 ORTHO05D006785 5.8e-35 153.3 365 29.3
Glyma.02G048200 Glycine max HOM05D005767 ORTHO05D006785 1.3e-34 152.1 379 30.1
Ciclev10025146m.g Citrus clementina HOM05D005767 ORTHO05D006785 1.7e-34 151.8 419 29.4
BraA01t00254Z Brassica rapa HOM05D005767 ORTHO05D006785 6.4e-34 149.8 338 33.1
CSS0010624 Camellia sinensis var. sinensis HOM05D005767 ORTHO05D006785 6.4e-34 149.8 344 32.3
Migut.N01741 Erythranthe guttata HOM05D005767 ORTHO05D006785 8.3e-34 149.4 387 30.0
A01p02680 Brassica napus HOM05D005767 ORTHO05D006785 1.1e-33 149.1 337 32.3
SGA_v2.0_scaffold76G25121 Striga asiatica HOM05D005767 ORTHO05D006785 1.1e-33 149.1 340 31.2
SHI08521 Sapria himalayana HOM05D000565 ORTHO05D002009 1.4e-33 148.7 542 28.0
Cpa.g.sc6.256 Carica papaya HOM05D005767 ORTHO05D006785 4.1e-33 147.1 330 33.6
Sabra07G0049300 Salix brachista HOM05D005767 ORTHO05D006785 7.1e-33 146.4 413 29.1
HPP92_005447 Vanilla planifolia HOM05D005767 ORTHO05D006785 1.2e-32 145.6 290 34.1
BolC1t00284H Brassica oleracea HOM05D005767 ORTHO05D006785 1.6e-32 145.2 277 35.4
Duzib147G1641 Durio zibethinus HOM05D005767 ORTHO05D006785 4.6e-32 143.7 621 25.1
FAN26G2808 Fragaria x ananassa HOM05D005767 ORTHO05D006785 7.8e-32 142.9 366 30.9
vmacro22135 Vaccinium macrocarpon HOM05D005767 ORTHO05D006785 7.8e-32 142.9 619 26.8
Phvul.003G261600 Phaseolus vulgaris HOM05D005767 ORTHO05D006785 5.1e-31 140.2 667 25.2
Rhsim10G0211700 Rhododendron simsii HOM05D005767 ORTHO05D006785 8.6e-31 139.4 354 31.9
Cfa024213 Carpinus fangiana HOM05D005767 ORTHO05D006785 5.6e-30 136.7 272 35.7
Gohir.D11G182500 Gossypium hirsutum HOM05D005767 ORTHO05D006785 5.6e-30 136.7 278 33.5
TWI73G0295 Tripterygium wilfordii HOM05D005767 ORTHO05D006785 9.5e-30 136.0 350 30.0
FAN26G3405 Fragaria x ananassa HOM05D005767 ORTHO05D006785 1.6e-29 135.2 341 31.1
MBI09_g09407_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 2.3e-28 131.3 547 26.5
Hma1.2p1_1115F.1_g258820 Hydrangea macrophylla HOM05D005767 ORTHO05D006785 7.8e-24 116.3 271 32.8
Lalb_Chr05g0229861 Lupinus albus HOM05D005767 ORTHO05D006785 1.1e-22 112.5 280 29.3
AagrBONN_evm.TU.Sc2ySwM_117.1514 Anthoceros agrestis HOM05D005767 ORTHO05D006785 2.1e-21 108.2 311 30.9
SMO290G0007 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 3.6e-21 107.5 210 33.3
Actinidia22973 Actinidia chinensis HOM05D005767 ORTHO05D006785 4.7e-21 107.1 570 23.3
unitig_32.g10945 Utricularia gibba HOM05D005767 ORTHO05D006785 1.5e-19 102.1 319 29.2
CBR_g18710 Chara braunii HOM05D005767 ORTHO05D006785 3.4e-19 100.9 135 43.0
Cre12.g532750 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 6.4e-18 96.7 296 29.4
FAN28G0764 Fragaria x ananassa HOM05D005767 ORTHO05D006785 1.1e-17 95.9 199 33.2
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 3.5e-16 90.9 291 29.6
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 1.3e-15 89.0 291 29.2
AagrBONN_evm.TU.Sc2ySwM_344.3375 Anthoceros agrestis HOM05D005767 ORTHO05D006785 5.1e-15 87.0 469 26.0
Cre07.g350550 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 8.7e-15 86.3 436 25.2
Thhalv10016487m.g Eutrema salsugineum HOM05D005620 ORTHO05D002193 8.7e-15 86.3 289 28.0
Psat7g239080 Pisum sativum HOM05D005767 ORTHO05D006785 1.1e-14 85.9 162 34.0
CsaV3_3G040940 Cucumis sativus L. HOM05D005620 ORTHO05D002193 3.3e-14 84.3 289 28.4
PSO339G1912 Papaver somniferum HOM05D005620 ORTHO05D002193 2.1e-13 81.6 180 33.3
MELO3C009829.2 Cucumis melo HOM05D005620 ORTHO05D002193 3.6e-13 80.9 289 28.4
Sc19g0008380 Simmondsia chinensis HOM05D005620 ORTHO05D002193 6.2e-13 80.1 180 32.2
TAR636G3531 Trochodendron aralioides HOM05D005620 ORTHO05D002193 6.2e-13 80.1 180 32.8
ClCG10G015520 Citrullus lanatus HOM05D005620 ORTHO05D002193 8.1e-13 79.7 182 32.4
Sed0006254 Sechium edule HOM05D005620 ORTHO05D002193 8.1e-13 79.7 289 26.6
SEGI_12703 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 1.8e-12 78.6 105 40.0
Atru.chr1.1154_Atru.chr1.1155 Acer truncatum HOM05D005620 ORTHO05D002193 6.9e-12 76.6 324 25.6
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 9.0e-12 76.3 280 29.3
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 1.2e-11 75.9 280 28.6
Oeu035312.2 Olea europaea HOM05D005767 ORTHO05D006785 2.6e-11 74.7 121 36.4
SMO290G0017 Selaginella moellendorffii HOM05D001672 ORTHO05D006785 4.4e-11 73.9 104 44.2
SMO145G0259 Selaginella moellendorffii HOM05D005620 ORTHO05D002193 5.8e-11 73.6 289 25.3
FAN05G4287 Fragaria x ananassa HOM05D005620 ORTHO05D002193 1.3e-10 72.4 180 30.0
Haze_26268 Corylus avellana HOM05D005620 ORTHO05D002193 8.4e-10 69.7 180 30.0
Rhsim03G0031100 Rhododendron simsii HOM05D005620 ORTHO05D002193 1.1e-09 69.3 180 30.6
MCO06G208 Micromonas commoda HOM05D005767 ORTHO05D006785 5.4e-09 67.0 87 43.7
Os01g0801100 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 5.4e-09 67.0 192 28.6
SEGI_01145 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 1.6e-08 65.5 112 37.5
MBI09_g45348_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 3.5e-08 64.3 124 32.3
MCO09G604 Micromonas commoda HOM05D005620 ORTHO05D002193 7.9e-08 63.2 309 26.2
Cre12.g534151 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 3.9e-07 60.8 103 39.8
PRCOL_00006578 Prasinoderma coloniale HOM05D005620 ORTHO05D002193 3.9e-07 60.8 210 28.6
Eucgr.I02343 Eucalyptus grandis HOM05D005767 ORTHO05D006785 5.1e-07 60.5 112 31.2
Duzib128G2038 Durio zibethinus HOM05D005620 ORTHO05D002193 2.5e-06 58.2 68 42.6
SEGI_05705 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 2.5e-06 58.2 73 43.8


User provided reference genes

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