Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 0.0e+00 1691.4 1086 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 8.0e-14 84.0 103 41.7
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.0e-13 83.6 158 33.5
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.3e-13 82.4 86 50.0
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 3.0e-13 82.0 103 43.7
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 4.0e-13 81.6 105 43.8
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 4.0e-13 81.6 103 42.7
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 5.2e-13 81.3 171 31.6
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 6.8e-13 80.9 103 42.7
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 8.8e-13 80.5 101 43.6
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 1.2e-12 80.1 103 41.7
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 1.5e-12 79.7 103 41.7
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.6e-12 79.0 103 41.7
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 2.6e-12 79.0 103 41.7
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 3.4e-12 78.6 103 41.7
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 3.4e-12 78.6 103 42.7
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 3.4e-12 78.6 101 42.6
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.4e-12 78.2 103 40.8
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 4.4e-12 78.2 103 41.7
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 4.4e-12 78.2 103 38.8
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 5.7e-12 77.8 152 34.2
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 5.7e-12 77.8 129 34.1
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.7e-12 77.8 103 41.7
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 5.7e-12 77.8 101 42.6
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 39.8
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 7.5e-12 77.4 101 40.6
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 41.7
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 40.8
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 7.5e-12 77.4 103 39.8
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 41.7
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 38.8
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 38.8
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 38.8
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 38.8
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 41.7
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 41.7
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 41.7
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 41.7
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 38.8
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 38.8
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 38.8
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 41.7
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 38.8
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 9.8e-12 77.0 103 40.8
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.3e-11 76.6 122 37.7
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.3e-11 76.6 122 37.7
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.3e-11 76.6 101 40.6
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.3e-11 76.6 103 40.8
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.3e-11 76.6 103 40.8
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.7e-11 76.3 103 40.8
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.7e-11 76.3 103 40.8
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.7e-11 76.3 103 39.8
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.7e-11 76.3 103 40.8
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.7e-11 76.3 103 40.8
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.7e-11 76.3 103 41.7
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 1.7e-11 76.3 103 41.7
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.7e-11 76.3 103 38.8
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.7e-11 76.3 103 40.8
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 2.2e-11 75.9 103 38.8
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 2.2e-11 75.9 103 38.8
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 2.2e-11 75.9 103 40.8
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 2.2e-11 75.9 103 39.8
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.2e-11 75.9 174 33.9
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 2.2e-11 75.9 103 38.8
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 2.2e-11 75.9 103 38.8
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 2.2e-11 75.9 103 40.8
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 2.2e-11 75.9 103 38.8
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 2.2e-11 75.9 103 38.8
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 38.8
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 38.8
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 38.8
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 38.8
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 38.8
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 38.8
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 41.7
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 38.8
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 38.8
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 40.8
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 40.8
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 2.8e-11 75.5 103 41.7
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 3.7e-11 75.1 104 42.3
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 3.7e-11 75.1 104 42.3
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 3.7e-11 75.1 104 42.3
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 3.7e-11 75.1 103 38.8
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 3.7e-11 75.1 103 38.8
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 3.7e-11 75.1 103 38.8
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 3.7e-11 75.1 103 38.8
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 3.7e-11 75.1 103 38.8
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 4.9e-11 74.7 103 39.8
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 4.9e-11 74.7 103 37.9
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.9e-11 74.7 105 41.0
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 4.9e-11 74.7 105 41.0
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 4.9e-11 74.7 103 38.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 4.9e-11 74.7 103 37.9
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 4.9e-11 74.7 158 33.5
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 4.9e-11 74.7 103 39.8
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 6.3e-11 74.3 103 39.8
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 8.3e-11 73.9 103 39.8
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 8.3e-11 73.9 103 41.7
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 8.3e-11 73.9 101 40.6
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.4e-10 73.2 102 40.2
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.8e-10 72.8 103 37.9
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 4.1e-10 71.6 96 40.6
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 9.1e-10 70.5 106 40.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 9.1e-10 70.5 106 40.6
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 3.3e-07 62.0 122 33.6
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 5.6e-07 61.2 80 41.2
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 7.2e-07 60.8 80 41.2
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 8.0e-06 57.4 80 40.0


User provided reference genes

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