Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 1.2e-308 1062.4 561 100.0
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 8.3e-31 139.4 250 36.0
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 2.0e-29 134.8 195 40.0
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 4.5e-29 133.7 195 42.6
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 6.6e-28 129.8 194 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 8.6e-28 129.4 245 36.7
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 1.1e-27 129.0 194 38.7
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 1.1e-27 129.0 200 38.0
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 1.5e-27 128.6 193 39.4
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.5e-27 128.6 195 37.4
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 2.5e-27 127.9 202 38.6
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 2.5e-27 127.9 202 38.6
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 2.5e-27 127.9 238 34.0
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.5e-27 127.9 238 34.0
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 3.3e-27 127.5 197 38.1
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 3.3e-27 127.5 208 38.0
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 4.3e-27 127.1 204 38.2
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 4.3e-27 127.1 196 37.8
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 5.6e-27 126.7 198 38.9
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 5.6e-27 126.7 190 38.9
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 5.6e-27 126.7 195 37.4
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 9.5e-27 125.9 195 38.5
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 1.2e-26 125.6 195 38.5
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.6e-26 125.2 197 38.6
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.6e-26 125.2 195 37.9
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 2.1e-26 124.8 211 37.4
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 2.1e-26 124.8 202 38.1
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 2.1e-26 124.8 195 37.9
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 3.6e-26 124.0 187 38.5
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 3.6e-26 124.0 197 38.1
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 3.6e-26 124.0 198 37.4
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 3.6e-26 124.0 195 36.4
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 4.7e-26 123.6 191 38.2
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 4.7e-26 123.6 195 35.9
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 6.1e-26 123.2 195 37.9
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 6.1e-26 123.2 195 38.5
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 8.0e-26 122.9 195 37.9
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 8.0e-26 122.9 196 37.8
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 8.0e-26 122.9 191 37.2
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 1.0e-25 122.5 195 37.9
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.4e-25 122.1 195 37.4
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 1.4e-25 122.1 195 37.4
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 1.8e-25 121.7 197 37.6
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 1.8e-25 121.7 203 33.5
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.8e-25 121.7 262 33.6
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 3.0e-25 120.9 191 37.7
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 4.0e-25 120.6 197 37.6
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 4.0e-25 120.6 248 33.5
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 4.0e-25 120.6 201 38.3
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 5.2e-25 120.2 210 35.2
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 5.2e-25 120.2 247 34.4
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 5.2e-25 120.2 240 33.8
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 6.8e-25 119.8 197 37.6
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 6.8e-25 119.8 201 36.3
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 8.9e-25 119.4 195 37.9
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 8.9e-25 119.4 193 36.8
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 1.2e-24 119.0 250 34.4
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 1.2e-24 119.0 195 36.4
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 1.5e-24 118.6 205 35.1
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 2.0e-24 118.2 246 32.5
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 2.0e-24 118.2 197 36.0
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 2.0e-24 118.2 201 35.8
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 2.0e-24 118.2 195 35.9
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 2.6e-24 117.9 191 37.7
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 2.6e-24 117.9 191 37.2
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 4.4e-24 117.1 250 33.6
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 4.4e-24 117.1 201 35.8
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 4.4e-24 117.1 198 35.9
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 5.8e-24 116.7 246 34.6
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 5.8e-24 116.7 195 35.9
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 5.8e-24 116.7 195 34.9
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 5.8e-24 116.7 201 35.3
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 9.8e-24 115.9 195 36.4
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 1.3e-23 115.5 200 38.0
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 2.2e-23 114.8 193 37.8
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 2.2e-23 114.8 202 35.1
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 2.2e-23 114.8 197 37.6
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 3.7e-23 114.0 185 38.4
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 4.9e-23 113.6 201 34.8
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 6.4e-23 113.2 195 35.9
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 1.4e-22 112.1 253 38.3
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 1.8e-22 111.7 247 33.2
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 2.4e-22 111.3 199 32.7
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 7.0e-22 109.8 160 38.1
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 7.0e-22 109.8 191 34.6
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 2.7e-21 107.8 197 35.0
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 6.0e-21 106.7 191 33.5
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.0e-21 106.7 195 34.4
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 6.0e-21 106.7 161 40.4
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 1.0e-20 105.9 203 33.5
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 6.6e-20 103.2 191 33.5
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.5e-19 102.1 202 36.6
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 7.3e-19 99.8 195 33.3
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 7.3e-19 99.8 197 33.0
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 2.1e-18 98.2 161 35.4
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 3.6e-18 97.4 195 32.3
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 8.0e-18 96.3 245 31.0
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 8.0e-18 96.3 245 31.4
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 8.0e-18 96.3 261 31.0
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 8.0e-18 96.3 195 32.3
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 4.0e-17 94.0 198 32.8
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 6.8e-17 93.2 195 31.8
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 1.5e-16 92.0 245 30.6
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 3.4e-16 90.9 195 31.8
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 1.3e-15 89.0 195 30.8
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 2.4e-14 84.7 190 31.6
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 1.2e-08 65.9 108 36.1
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 4.9e-07 60.5 73 39.7


User provided reference genes

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