Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 2.4e-303 1044.6 506 100.0
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.8e-157 560.1 452 58.8
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 6.1e-150 535.0 452 56.2
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 7.5e-148 528.1 452 55.1
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 7.0e-146 521.5 454 57.7
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.3e-139 500.7 448 54.0
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 3.7e-139 499.2 453 53.4
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 9.2e-138 494.6 452 53.3
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.2e-137 494.2 448 54.5
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.2e-134 484.2 452 52.4
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 2.3e-133 479.9 452 51.3
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 5.2e-133 478.8 451 51.4
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.5e-132 477.2 451 52.1
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 5.7e-132 475.3 453 51.4
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.3e-131 474.2 452 52.2
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.9e-131 473.0 452 50.0
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 8.3e-131 471.5 398 56.0
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.1e-130 471.1 451 51.4
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.1e-130 471.1 445 52.1
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.4e-130 470.7 454 48.9
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 1.4e-130 470.7 452 50.0
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 4.6e-129 465.7 452 49.6
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.7e-128 463.8 452 49.3
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 2.3e-128 463.4 443 50.6
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 3.9e-128 462.6 365 60.0
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.5e-127 460.7 451 50.6
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 7.3e-127 458.4 532 46.1
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.2e-126 457.6 413 52.8
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 2.1e-126 456.8 502 45.2
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 3.1e-125 453.0 454 49.3
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 3.1e-125 453.0 448 48.4
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 2.0e-124 450.3 461 49.2
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 5.8e-124 448.7 452 49.1
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 5.8e-124 448.7 452 49.1
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 5.8e-124 448.7 448 48.7
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.3e-123 447.6 453 49.9
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 4.9e-123 445.7 454 48.7
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 2.4e-122 443.4 450 48.0
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 5.4e-122 442.2 441 49.0
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.6e-121 440.7 448 47.5
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 4.6e-121 439.1 448 47.5
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 7.8e-121 438.3 448 47.5
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 3.6e-118 429.5 465 48.0
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 1.5e-116 424.1 450 48.7
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 4.4e-116 422.5 449 47.4
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 9.8e-116 421.4 452 45.6
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 1.3e-112 411.0 453 45.7
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 2.3e-112 410.2 453 46.6
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 5.1e-112 409.1 447 46.3
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.1e-111 407.9 511 43.8
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.9e-111 407.1 437 46.7
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.5e-111 406.8 437 46.7
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.5e-111 406.8 437 46.7
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 2.1e-110 403.7 391 50.4
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 4.9e-107 392.5 459 44.4
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 4.9e-107 392.5 451 46.1
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 6.4e-107 392.1 438 45.4
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.2e-106 389.8 472 43.4
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 5.4e-106 389.0 438 45.2
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 7.8e-105 385.2 434 45.4
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 7.8e-105 385.2 445 43.8
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 8.6e-104 381.7 365 52.3
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 9.6e-103 378.3 431 43.9
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.2e-102 377.9 361 51.0
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 1.2e-102 377.9 454 45.2
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.5e-100 370.9 454 44.5
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.5e-100 370.9 452 43.1
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 2.0e-100 370.5 449 41.6
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 5.8e-100 369.0 451 44.6
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 1.7e-99 367.5 468 42.1
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.9e-99 366.7 450 44.4
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 6.4e-99 365.5 454 42.7
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 6.4e-99 365.5 430 43.0
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 4.2e-98 362.8 433 43.2
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 5.4e-98 362.5 449 41.2
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 7.1e-98 362.1 413 45.5
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 3.9e-96 356.3 440 41.4
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.9e-96 356.3 440 41.4
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.3e-94 351.3 440 41.4
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 4.8e-94 349.4 447 43.2
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 4.8e-94 349.4 363 47.9
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 6.2e-94 349.0 456 43.0
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.4e-93 347.8 447 42.7
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 5.3e-93 345.9 390 45.4
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.0e-92 344.0 441 41.5
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 9.9e-92 341.7 341 52.2
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 1.3e-91 341.3 447 39.6
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 2.2e-91 340.5 442 41.2
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.4e-90 337.8 454 40.5
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.2e-90 336.3 475 38.1
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 7.1e-90 335.5 454 40.1
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.0e-88 331.6 454 39.9
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.3e-88 330.5 471 37.8
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.0e-88 330.1 436 40.1
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 8.7e-88 328.6 455 40.2
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 2.1e-86 323.9 431 41.3
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 6.2e-86 322.4 447 40.0
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.1e-85 321.6 464 40.1
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 5.3e-85 319.3 443 38.4
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 3.8e-83 313.2 459 39.7
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.4e-82 311.2 355 43.4
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 3.2e-82 310.1 249 59.8
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 5.5e-82 309.3 443 39.7
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 4.6e-81 306.2 470 37.4
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 2.3e-80 303.9 454 38.5
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 1.3e-78 298.1 455 38.0
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.1e-78 297.4 465 37.8
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 4.8e-78 296.2 454 37.7
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.8e-78 296.2 467 36.4
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.8e-78 296.2 467 36.4
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 8.1e-78 295.4 461 37.7
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 1.8e-77 294.3 294 49.7
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.4e-77 293.9 454 36.6
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 4.0e-77 293.1 456 37.7
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 4.0e-77 293.1 485 36.7
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.5e-76 291.2 457 37.0
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 2.6e-76 290.4 455 37.1
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.0e-75 288.5 467 37.3
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.7e-75 287.7 323 45.5
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 4.2e-74 283.1 440 38.2
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 4.2e-74 283.1 454 35.7
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 2.1e-73 280.8 474 36.9
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.1e-73 280.8 454 36.6
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.3e-72 277.3 453 35.5
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 9.6e-71 271.9 447 38.5
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 9.6e-71 271.9 447 38.5
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 9.6e-71 271.9 447 37.8
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 3.7e-70 270.0 498 33.3
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 2.4e-69 267.3 454 38.5
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 1.5e-68 264.6 450 38.4
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 2.0e-68 264.2 447 38.7
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 2.0e-68 264.2 490 36.7
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.1e-66 258.5 314 41.4
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 5.5e-66 256.1 256 49.6
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 9.3e-66 255.4 305 41.6
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 6.7e-64 249.2 312 41.3
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 8.7e-64 248.8 276 46.0
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 9.7e-63 245.4 249 49.8
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 8.2e-62 242.3 456 34.6
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.6e-60 237.3 196 60.7
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 6.5e-59 232.6 436 32.8
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 6.5e-59 232.6 415 35.4
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.2e-49 201.8 282 41.5
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 1.0e-48 198.7 295 41.4
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 4.1e-45 186.8 272 37.1
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.6e-44 184.9 354 33.1
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 8.8e-40 169.1 126 62.7
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.4e-39 166.8 164 52.4
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 2.0e-36 157.9 172 50.0
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 4.5e-36 156.8 426 29.3
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 8.8e-32 142.5 179 38.0
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 7.0e-29 132.9 304 31.2
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.0e-28 131.3 191 40.3
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.6e-23 114.4 148 43.2
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.2e-22 111.3 166 39.2
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.1e-21 109.0 114 47.4
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 8.0e-17 92.8 90 51.1
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.4e-16 92.0 110 45.5
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 9.2e-13 79.3 99 44.4
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 1.3e-11 75.5 64 57.8
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 5.0e-11 73.6 63 54.0
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 5.0e-11 73.6 101 43.6
MCO05G023 Micromonas commoda HOM05D004162 ORTHO05D004543 6.6e-11 73.2 390 24.4
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 4.7e-09 67.0 102 44.1
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 3.1e-08 64.3 64 46.9
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 8.9e-08 62.8 74 44.6
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 4.4e-07 60.5 77 33.8


User provided reference genes

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