Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 3.8e-193 677.9 333 100.0
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 9.5e-160 567.0 332 82.8
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 7.1e-155 550.8 334 81.4
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 2.1e-154 549.3 332 81.0
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 2.5e-152 542.3 334 81.4
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 5.3e-150 534.6 335 80.6
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 1.7e-148 529.6 337 78.6
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 7.8e-146 520.8 334 78.1
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 1.4e-142 510.0 334 76.0
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 9.9e-141 503.8 335 75.8
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 4.9e-140 501.5 336 74.7
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 8.4e-140 500.7 331 74.6
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 4.2e-139 498.4 319 77.4
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 5.4e-139 498.0 333 75.1
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 5.4e-139 498.0 314 77.7
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 3.0e-137 492.3 328 75.3
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 8.7e-137 490.7 334 74.0
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 1.1e-136 490.3 337 72.7
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 1.5e-136 490.0 332 72.9
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 5.6e-136 488.0 334 74.0
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 8.1e-135 484.2 334 73.7
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 1.1e-134 483.8 316 75.9
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 2.4e-134 482.6 329 71.7
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 6.9e-134 481.1 327 74.3
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 6.9e-134 481.1 334 73.1
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 6.9e-134 481.1 323 73.7
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 1.2e-133 480.3 338 71.3
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 5.8e-133 478.0 329 72.3
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 5.8e-133 478.0 344 70.9
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 5.8e-133 478.0 334 72.2
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 1.3e-132 476.9 326 73.9
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.7e-132 476.5 334 70.7
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 1.1e-131 473.8 330 72.4
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 1.4e-131 473.4 339 74.0
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 1.9e-131 473.0 340 74.1
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 1.6e-130 469.9 334 68.9
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 1.3e-129 466.8 331 72.5
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 1.8e-129 466.5 327 70.9
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 1.8e-129 466.5 333 70.3
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 8.7e-129 464.2 306 73.2
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 3.3e-128 462.2 326 69.9
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 9.6e-128 460.7 326 69.6
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 1.3e-127 460.3 341 69.2
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 1.3e-127 460.3 331 69.5
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 1.3e-127 460.3 326 69.6
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 1.6e-127 459.9 324 70.1
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 1.6e-127 459.9 331 69.2
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 4.8e-127 458.4 337 68.5
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 6.2e-127 458.0 326 69.9
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 1.1e-126 457.2 317 71.0
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 1.2e-125 453.8 332 68.7
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 5.8e-125 451.4 306 72.9
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 7.6e-125 451.1 312 71.2
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 1.0e-124 450.7 349 67.9
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 2.9e-124 449.1 312 71.2
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 3.8e-124 448.7 324 69.8
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 8.4e-124 447.6 333 67.0
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 1.4e-123 446.8 316 69.3
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 1.9e-123 446.4 334 68.6
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 2.5e-123 446.0 337 66.8
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 9.3e-123 444.1 328 67.4
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 2.1e-122 443.0 306 70.9
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 2.1e-122 443.0 324 67.9
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 3.5e-122 442.2 332 68.1
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 7.9e-122 441.0 335 66.6
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 1.5e-120 436.8 324 67.6
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 2.5e-120 436.0 315 67.9
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.5e-120 436.0 297 71.4
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 3.3e-120 435.6 335 66.9
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 7.4e-120 434.5 346 64.2
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 9.7e-120 434.1 326 68.1
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 1.6e-119 433.3 303 69.6
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 1.6e-119 433.3 303 69.6
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 1.6e-119 433.3 333 66.7
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 3.7e-119 432.2 306 70.3
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 3.7e-119 432.2 331 65.6
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 6.3e-119 431.4 303 69.0
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 6.3e-119 431.4 303 69.0
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 8.2e-119 431.0 303 69.0
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 5.3e-118 428.3 333 65.2
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 9.0e-118 427.6 273 74.0
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 1.2e-117 427.2 342 63.2
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 2.0e-117 426.4 334 65.0
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.6e-117 426.0 284 72.5
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 2.5e-115 419.5 239 82.4
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 9.4e-115 417.5 314 66.9
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 1.2e-114 417.2 304 67.1
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 3.6e-114 415.6 261 75.9
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 2.5e-112 409.5 328 63.7
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 4.3e-112 408.7 231 84.4
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 6.3e-111 404.8 271 72.3
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 1.1e-110 404.1 334 61.7
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 4.5e-109 398.7 338 62.7
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 1.1e-107 394.0 327 62.7
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 5.5e-107 391.7 283 70.7
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 5.5e-107 391.7 243 79.8
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 3.1e-102 375.9 254 70.1
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 2.0e-101 373.2 216 80.1
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 8.5e-100 367.9 307 61.2
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 1.8e-89 333.6 231 67.1
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 4.0e-89 332.4 324 55.2
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 4.0e-89 332.4 312 55.4
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 8.5e-84 314.7 184 80.4
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 8.5e-84 314.7 184 80.4
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 9.1e-78 294.7 307 48.2
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 7.7e-77 291.6 196 74.5
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 1.0e-73 281.2 202 63.9
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 6.8e-65 251.9 189 64.0
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 5.4e-62 242.3 149 79.9
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 4.7e-58 229.2 204 58.8
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 3.0e-44 183.3 177 50.3
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 1.1e-33 148.3 145 52.4
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 1.2e-29 134.8 78 78.2
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 3.8e-23 113.2 134 49.3
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 4.3e-19 99.8 59 79.7
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 4.3e-11 73.2 51 62.7
Sed0001393 Sechium edule HOM05D006818 ORTHO05D372820 2.4e-09 67.4 261 29.9
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 9.0e-09 65.5 187 27.3
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 1.0e-07 62.0 171 29.8
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 1.3e-07 61.6 174 29.9
Sp6g19740 Schrenkiella parvula HOM05D003204 ORTHO05D003566 1.7e-07 61.2 170 28.8
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 2.2e-07 60.8 170 28.8
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 2.2e-07 60.8 179 28.5
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 2.2e-07 60.8 179 28.5
FvH4_1g01260 Fragaria vesca HOM05D003204 ORTHO05D003566 2.9e-07 60.5 170 28.2
Thecc.09G034200 Theobroma cacao HOM05D003204 ORTHO05D003566 2.9e-07 60.5 170 28.8
Ah.09g226600 Amaranthus hybridus HOM05D003204 ORTHO05D003566 3.8e-07 60.1 170 26.5
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 3.8e-07 60.1 170 27.6
VMungo1309G2170 Vigna mungo HOM05D003204 ORTHO05D003566 3.8e-07 60.1 170 27.6
Eucgr.C00370 Eucalyptus grandis HOM05D003204 ORTHO05D003566 5.0e-07 59.7 170 29.4
BcaC04g19909 Brassica carinata HOM05D003204 ORTHO05D003566 6.5e-07 59.3 170 28.2
C09p49990 Brassica napus HOM05D003204 ORTHO05D003566 6.5e-07 59.3 170 28.2
BolC9t57852H Brassica oleracea HOM05D003204 ORTHO05D003566 6.5e-07 59.3 170 28.2
Duzib168G0965 Durio zibethinus HOM05D003204 ORTHO05D003566 6.5e-07 59.3 170 27.6
CAN.G551.27 Capsicum annuum HOM05D003204 ORTHO05D003566 8.4e-07 58.9 175 28.6
COL.COLO4_18771 Corchorus olitorius HOM05D003204 ORTHO05D003566 8.4e-07 58.9 170 27.6
Manes.06G038651 Manihot esculenta HOM05D003204 ORTHO05D003566 8.4e-07 58.9 170 26.5
A10p16100 Brassica napus HOM05D003204 ORTHO05D003566 1.1e-06 58.5 170 28.2
FAN26G1065 Fragaria x ananassa HOM05D003204 ORTHO05D003566 1.1e-06 58.5 170 27.6
BcaC03g14125 Brassica carinata HOM05D003204 ORTHO05D003566 1.4e-06 58.2 170 28.2
Sopen07g001560 Solanum pennellii HOM05D003204 ORTHO05D003566 1.4e-06 58.2 171 28.1
Migut.K00344 Erythranthe guttata HOM05D003204 ORTHO05D003566 1.9e-06 57.8 170 28.2
Gohir.A05G051200 Gossypium hirsutum HOM05D003204 ORTHO05D003566 2.5e-06 57.4 170 26.5
Pp3c18_22450 Physcomitrium patens HOM05D003204 ORTHO05D003566 2.5e-06 57.4 180 26.1
arahy.Tifrunner.gnm1.ann1.U4K9V9 Arachis hypogaea HOM05D003204 ORTHO05D003566 4.2e-06 56.6 170 27.1
Solyc07g005210.3 Solanum lycopersicum HOM05D003204 ORTHO05D003566 4.2e-06 56.6 171 27.5
BraA10t43619Z Brassica rapa HOM05D003204 ORTHO05D003566 5.5e-06 56.2 170 27.6
Sed0022031 Sechium edule HOM05D003204 ORTHO05D003566 5.5e-06 56.2 170 28.8
PGSC0003DMG400003187 Solanum tuberosum HOM05D003204 ORTHO05D003566 5.5e-06 56.2 171 28.1
THA.LOC104811838 Tarenaya hassleriana HOM05D003204 ORTHO05D003566 5.5e-06 56.2 185 27.0
Ca_21107_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 9.3e-06 55.5 170 25.9


User provided reference genes

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