Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1851.6 990 100.0
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1597.0 996 85.7
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1587.8 999 85.4
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1574.7 998 84.8
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1555.8 1002 83.3
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1552.7 999 83.5
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1551.6 994 82.5
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1543.1 997 81.1
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1512.7 995 80.5
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1489.9 1068 77.2
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1445.3 1007 76.2
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1437.9 1009 75.6
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1409.4 1016 73.4
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1407.5 994 76.3
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1407.5 992 74.8
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1403.7 1016 74.4
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1400.2 1017 73.6
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1399.4 1013 73.4
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1399.4 1014 73.5
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1397.1 1012 73.8
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1395.6 1006 73.7
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1395.6 1006 73.7
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1395.2 1007 73.1
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1394.4 1015 73.8
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1394.4 999 75.8
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1391.7 1006 73.7
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1391.7 1008 73.5
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1389.4 1043 72.8
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1387.5 1016 73.8
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1378.6 996 74.8
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1378.6 1025 72.8
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1377.5 943 76.2
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1377.1 1005 72.3
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1373.6 1022 72.6
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1373.6 997 72.6
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1369.8 1020 72.7
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1369.0 1014 72.1
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1366.7 1015 72.1
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1366.7 1006 72.3
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1364.0 1006 72.3
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1358.2 1011 71.4
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1355.9 1024 72.0
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1353.6 997 72.2
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1353.6 1015 70.5
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1350.5 1014 70.8
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1349.0 941 75.3
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1348.2 1004 71.9
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1344.7 1019 71.0
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1344.3 1022 70.4
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1343.9 1011 70.2
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1343.6 1009 70.9
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1337.4 1022 70.6
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1335.9 1022 70.1
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1330.1 971 72.8
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1328.9 992 71.9
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1321.6 1018 70.1
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1319.7 1014 68.8
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1318.9 1002 70.0
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1318.1 1014 68.7
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1317.4 976 71.2
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1314.3 1014 68.5
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1314.3 1049 67.9
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1310.8 999 69.6
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1308.9 1047 68.3
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1303.9 970 70.4
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1303.5 970 70.4
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1300.8 1006 68.7
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1300.4 1017 68.5
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1299.3 1016 68.7
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1298.9 1002 69.1
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1297.7 990 68.1
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1292.3 1017 68.1
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1291.9 993 69.1
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1291.2 1017 68.3
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1289.6 996 69.1
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1289.2 1017 68.0
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1288.1 1010 68.7
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1287.3 971 69.8
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1274.2 1037 67.3
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1274.2 1053 65.6
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1273.8 1006 68.0
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1272.7 945 71.1
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1272.3 1021 67.0
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1269.2 1042 67.0
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1268.1 1044 65.0
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1267.3 935 71.1
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1266.1 1027 67.2
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1265.8 995 67.9
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1254.6 1012 67.7
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1244.6 994 67.1
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1241.5 1014 66.5
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1233.4 963 66.1
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1231.5 906 73.2
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1228.8 1003 65.0
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1224.2 941 67.8
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1221.8 1011 66.3
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1221.5 1011 66.4
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1213.0 995 66.3
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1194.9 1019 65.6
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1188.3 793 77.6
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 0.0e+00 1188.3 787 79.4
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1159.1 1074 59.4
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1157.5 1010 61.8
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 0.0e+00 1137.9 784 75.8
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 0.0e+00 1108.6 1018 59.5
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 0.0e+00 1102.4 945 61.0
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.2e-300 1035.8 703 77.5
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.2e-295 1020.0 979 56.0
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 3.3e-293 1011.9 969 56.7
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 3.5e-290 1001.9 947 56.9
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 7.7e-290 1000.7 832 64.5
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 4.2e-288 995.0 1015 52.9
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 3.0e-270 935.6 963 53.5
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.0e-250 869.8 663 68.8
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 2.3e-246 856.3 650 69.2
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.8e-231 806.2 959 46.9
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 6.0e-218 761.9 970 49.7
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 9.0e-214 748.0 563 66.6
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 8.4e-212 741.5 622 65.3
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.6e-207 727.2 549 69.8
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.5e-205 720.7 689 54.9
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.2e-197 694.5 596 60.1
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 5.9e-189 665.6 583 61.6
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.8e-183 646.0 535 64.5
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.4e-181 639.8 1008 43.3
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 8.2e-175 618.6 563 57.9
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 6.5e-156 555.8 612 50.3
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 2.7e-149 533.9 1021 35.3
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 3.3e-147 526.9 577 53.7
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 4.9e-135 486.5 976 32.3
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.4e-126 458.4 318 73.6
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 8.4e-119 432.6 363 60.9
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.0e-116 425.6 966 30.5
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 1.0e-116 425.6 382 63.4
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 4.2e-110 403.7 285 74.0
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 7.6e-104 382.9 276 73.2
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 1.4e-102 378.6 564 43.6
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.9e-99 368.2 296 62.8
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 4.3e-99 367.1 265 70.6
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 9.0e-97 359.4 399 48.1
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.6e-96 357.8 556 41.9
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 1.5e-91 342.0 277 69.0
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 3.1e-89 334.3 286 64.0
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 9.0e-89 332.8 312 58.7
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 5.5e-86 323.6 554 42.1
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 3.5e-85 320.9 220 73.2
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 4.2e-78 297.4 189 82.5
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.5e-78 297.0 299 59.9
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 9.7e-75 286.2 244 59.0
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 1.1e-73 282.7 247 61.9
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.6e-69 267.3 242 66.1
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 7.9e-69 266.5 589 34.1
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 2.8e-66 258.1 424 43.4
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 1.5e-64 252.3 219 56.2
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 1.0e-63 249.6 411 43.6
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.6e-61 242.3 426 41.1
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 8.5e-55 219.9 251 53.4
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.2e-53 216.1 225 56.4
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 6.1e-53 213.8 309 46.6
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 1.6e-48 199.1 151 72.8
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 8.5e-47 193.4 163 66.9
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 4.0e-44 184.5 135 70.4
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 2.4e-41 175.3 332 38.0
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 2.7e-40 171.8 232 45.7
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 3.8e-39 167.9 159 58.5
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.1e-37 162.2 409 35.2
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 6.1e-37 160.6 100 78.0
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 6.1e-37 160.6 193 49.2
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 3.0e-36 158.3 124 64.5
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 3.4e-35 154.8 137 61.3
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.5e-32 144.8 169 53.3
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 2.0e-27 129.0 174 46.0
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 7.5e-27 127.1 79 75.9
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 2.7e-24 118.6 179 43.6
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 3.5e-24 118.2 122 52.5
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 2.3e-23 115.5 161 44.1
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 4.3e-22 111.3 74 73.0
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 4.3e-22 111.3 74 73.0
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 6.2e-21 107.5 72 72.2
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 7.0e-17 94.0 104 52.9
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 8.9e-12 77.0 97 50.5
Phvul.003G243600 Phaseolus vulgaris HOM05D002898 ORTHO05D003424 1.1e-06 60.1 163 31.3
C01p10430 Brassica napus HOM05D003801 ORTHO05D017532 4.3e-06 58.2 35 74.3


User provided reference genes

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